Variant report

Variant	rs10426896
Chromosome Location	chr19:21182637-21182638
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10402206	1.00[AMR][1000 genomes]
rs10406067	1.00[AMR][1000 genomes]
rs10406963	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10407709	1.00[AMR][1000 genomes]
rs10409986	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10410085	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10410875	1.00[AMR][1000 genomes]
rs10413569	1.00[ASN][1000 genomes]
rs10413647	1.00[AMR][1000 genomes]
rs10413841	1.00[ASN][1000 genomes]
rs10414113	1.00[AMR][1000 genomes]
rs10414275	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10414637	1.00[AMR][1000 genomes]
rs10416447	1.00[ASN][1000 genomes]
rs10416560	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10424510	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10425744	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11880192	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11880228	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12104385	1.00[AMR][1000 genomes]
rs13345915	1.00[AMR][1000 genomes]
rs28670574	1.00[AMR][1000 genomes]
rs28780501	1.00[AMR][1000 genomes]
rs28840098	1.00[AMR][1000 genomes]
rs28861172	1.00[AMR][1000 genomes]
rs61734283	1.00[AMR][1000 genomes]
rs62122571	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73531817	1.00[AMR][1000 genomes]
rs73546311	1.00[AMR][1000 genomes]
rs73548266	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062776	chr19:20818886-21273361	Weak transcription Active TSS Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	nsv932110	chr19:20818886-21278952	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	esv2763043	chr19:20818886-21290543	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
4	esv3385528	chr19:21030777-21495566	Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
5	nsv817536	chr19:21041855-21348237	Strong transcription Enhancers Genic enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
6	esv1850387	chr19:21109758-21294264	Active TSS ZNF genes & repeats Strong transcription Genic enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:21181400-21182800	Weak transcription	Spleen	Spleen
2	chr19:21182200-21182800	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr19:21182200-21182800	Active TSS	Brain Inferior Temporal Lobe	brain
4	chr19:21182200-21183000	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr19:21182200-21183000	Active TSS	Breast Myoepithelial Primary Cells	Breast
6	chr19:21182200-21183000	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr19:21182200-21183000	Active TSS	Fetal Brain Female	brain
8	chr19:21182200-21183000	Active TSS	Fetal Stomach	stomach
9	chr19:21182200-21183000	Active TSS	Stomach Smooth Muscle	stomach
10	chr19:21182200-21183200	Active TSS	Pancreatic Islets	Pancreatic Islet
11	chr19:21182200-21183400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr19:21182200-21183400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
13	chr19:21182200-21183600	Active TSS	Brain Germinal Matrix	brain
14	chr19:21182200-21183800	Active TSS	HUES64 Cell Line	embryonic stem cell
15	chr19:21182400-21182800	Active TSS	Primary hematopoietic stem cells short term culture	blood
16	chr19:21182400-21182800	Active TSS	Primary T regulatory cells fromperipheralblood	blood
17	chr19:21182400-21182800	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr19:21182400-21182800	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr19:21182400-21182800	Active TSS	Skeletal Muscle Female	skeletal muscle
20	chr19:21182400-21182800	Active TSS	Stomach Mucosa	stomach
21	chr19:21182400-21182800	Active TSS	NHDF-Ad	bronchial
22	chr19:21182400-21183000	ZNF genes & repeats	Primary neutrophils fromperipheralblood	blood
23	chr19:21182400-21183000	Active TSS	Primary hematopoietic stem cells	blood
24	chr19:21182400-21183000	Active TSS	Cortex derived primary cultured neurospheres	brain
25	chr19:21182400-21183000	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr19:21182400-21183000	Active TSS	Brain Anterior Caudate	brain
27	chr19:21182400-21183000	Active TSS	Brain Hippocampus Middle	brain
28	chr19:21182400-21183000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
29	chr19:21182400-21183000	Active TSS	Duodenum Mucosa	Duodenum
30	chr19:21182400-21183200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr19:21182400-21183200	Active TSS	Muscle Satellite Cultured Cells	--
32	chr19:21182400-21183200	Flanking Active TSS	Adipose Nuclei	Adipose
33	chr19:21182400-21183200	Active TSS	Thymus	Thymus
34	chr19:21182400-21183200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
35	chr19:21182400-21183200	Active TSS	NH-A	brain
36	chr19:21182400-21183200	Active TSS	Osteobl	bone
37	chr19:21182400-21183400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr19:21182400-21183400	Active TSS	Fetal Intestine Large	intestine
39	chr19:21182400-21183400	Active TSS	Fetal Intestine Small	intestine
40	chr19:21182400-21183400	Active TSS	Rectal Mucosa Donor 29	rectum
41	chr19:21182400-21183400	Active TSS	Rectal Smooth Muscle	rectum
42	chr19:21182400-21183400	Active TSS	GM12878-XiMat	blood
43	chr19:21182400-21183400	Active TSS	NHEK	skin
44	chr19:21182400-21183600	Active TSS	Fetal Kidney	kidney
45	chr19:21182400-21183600	Active TSS	Fetal Lung	lung
46	chr19:21182400-21183800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr19:21182400-21183800	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr19:21182600-21182800	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr19:21182600-21182800	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr19:21182600-21182800	Active TSS	Primary B cells from cord blood	blood

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