Variant report

Variant	rs1042714
Chromosome Location	chr5:148206473-148206474
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:80596931..80597570-chr5:148205888..148206610,2	NB4	blood:
2	chr5:148206107..148206638-chr7:100026025..100026612,2	NB4	blood:

Variant related genes	Relation type
ENSG00000131732	Chromatin interaction
ENSG00000078487	Chromatin interaction
ENSG00000247572	Chromatin interaction
ENSG00000146834	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10078004	0.90[EUR][1000 genomes]
rs1042711	0.85[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11168066	0.92[CEU][hapmap];0.97[EUR][1000 genomes]
rs11168067	0.97[EUR][1000 genomes]
rs11168068	0.97[EUR][1000 genomes]
rs11168070	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11746634	0.97[EUR][1000 genomes]
rs11958940	0.97[EUR][1000 genomes]
rs11959427	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11959615	0.92[CEU][hapmap];0.96[EUR][1000 genomes]
rs1432622	0.96[CEU][hapmap];0.97[EUR][1000 genomes]
rs1432623	0.97[EUR][1000 genomes]
rs1801704	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2053044	0.96[CEU][hapmap];0.97[EUR][1000 genomes]
rs2082382	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2082395	0.97[EUR][1000 genomes]
rs2400707	0.96[CEU][hapmap];0.97[EUR][1000 genomes]
rs34064454	0.97[EUR][1000 genomes]
rs34623097	0.95[ASN][1000 genomes]
rs4705059	0.88[EUR][1000 genomes]
rs4705060	0.88[EUR][1000 genomes]
rs56330463	0.94[EUR][1000 genomes]
rs60243336	0.95[ASN][1000 genomes]
rs67339154	0.90[EUR][1000 genomes]
rs9325120	0.95[EUR][1000 genomes]
rs9325122	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:148205000-148206800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr5:148205000-148206800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr5:148205000-148207000	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr5:148205000-148209400	Active TSS	Right Ventricle	heart
5	chr5:148205200-148206600	Active TSS	H9 Cell Line	embryonic stem cell
6	chr5:148205200-148206600	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr5:148205200-148206600	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr5:148205200-148206600	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
9	chr5:148205200-148206600	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
10	chr5:148205200-148206600	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
11	chr5:148205200-148206800	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
12	chr5:148205200-148206800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
13	chr5:148205200-148206800	Active TSS	Left Ventricle	heart
14	chr5:148205200-148207000	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
15	chr5:148205200-148207000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr5:148205200-148207000	Bivalent/Poised TSS	Fetal Intestine Small	intestine
17	chr5:148205200-148207200	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr5:148205200-148207200	Flanking Active TSS	Duodenum Mucosa	Duodenum
19	chr5:148205200-148207600	Flanking Active TSS	Adipose Nuclei	Adipose
20	chr5:148205200-148209200	Active TSS	HSMMtube	muscle
21	chr5:148205200-148209400	Active TSS	Psoas Muscle	Psoas
22	chr5:148205200-148209800	Active TSS	Brain Angular Gyrus	brain
23	chr5:148205200-148211000	Active TSS	Right Atrium	heart
24	chr5:148205400-148206600	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
25	chr5:148205400-148206600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr5:148205400-148206600	Active TSS	Aorta	Aorta
27	chr5:148205400-148206600	Active TSS	Colon Smooth Muscle	Colon
28	chr5:148205400-148206800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr5:148205400-148206800	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
30	chr5:148205400-148206800	Flanking Bivalent TSS/Enh	Placenta	Placenta
31	chr5:148205400-148207200	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
32	chr5:148205400-148207600	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
33	chr5:148205400-148209600	Active TSS	Fetal Heart	heart
34	chr5:148205400-148210000	Active TSS	Pancreatic Islets	Pancreatic Islet
35	chr5:148205400-148210200	Active TSS	Duodenum Smooth Muscle	Duodenum
36	chr5:148205400-148212200	Active TSS	Brain Hippocampus Middle	brain
37	chr5:148205600-148206600	Active TSS	Primary T helper naive cells from peripheral blood	blood
38	chr5:148205600-148206600	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr5:148205600-148206800	Active TSS	Primary T killer memory cells from peripheral blood	blood
40	chr5:148205600-148208200	Active TSS	NHEK	skin
41	chr5:148205600-148208800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr5:148205600-148210000	Active TSS	Brain Substantia Nigra	brain
43	chr5:148205600-148211200	Active TSS	Brain Cingulate Gyrus	brain
44	chr5:148205600-148211200	Active TSS	Brain Inferior Temporal Lobe	brain
45	chr5:148205800-148206600	Active TSS	Primary monocytes fromperipheralblood	blood
46	chr5:148205800-148206600	Active TSS	Primary T regulatory cells fromperipheralblood	blood
47	chr5:148205800-148206600	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
48	chr5:148205800-148206600	Bivalent/Poised TSS	Fetal Kidney	kidney
49	chr5:148205800-148206800	Active TSS	A549	lung
50	chr5:148205800-148206800	Active TSS	NHLF	lung

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