Variant report

Variant	rs10430892
Chromosome Location	chr11:17369618-17369619
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:17368260..17372452-chr11:17372695..17374422,3	K562	blood:
2	chr11:17368082..17370692-chr11:17372367..17374432,2	MCF-7	breast:
3	chr11:17368757..17371339-chr11:17372930..17375139,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000188211	Chromatin interaction

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10466382	0.85[CHB][hapmap]
rs10766383	0.81[CHB][hapmap]
rs10766385	0.86[CHB][hapmap]
rs10766389	0.95[CHB][hapmap]
rs10766390	0.95[CHB][hapmap]
rs10766391	0.91[CHB][hapmap]
rs10832757	0.86[CHB][hapmap]
rs10832763	0.82[CHB][hapmap]
rs10832765	0.85[CHB][hapmap]
rs10832768	0.86[CHB][hapmap]
rs10832769	0.82[CHB][hapmap]
rs10832770	0.82[CHB][hapmap]
rs10832772	0.91[CHB][hapmap];0.80[JPT][hapmap];0.81[ASN][1000 genomes]
rs10832774	0.80[ASN][1000 genomes]
rs10832775	0.91[CHB][hapmap];0.80[JPT][hapmap];0.80[ASN][1000 genomes]
rs10832779	0.91[CHB][hapmap]
rs10832781	0.95[CHB][hapmap]
rs10832782	0.87[CHB][hapmap]
rs11024185	1.00[EUR][1000 genomes]
rs11024186	1.00[EUR][1000 genomes]
rs11024190	1.00[EUR][1000 genomes]
rs11024197	1.00[EUR][1000 genomes]
rs11024199	1.00[EUR][1000 genomes]
rs11024201	1.00[EUR][1000 genomes]
rs11024226	1.00[EUR][1000 genomes]
rs11024243	1.00[EUR][1000 genomes]
rs11024245	1.00[EUR][1000 genomes]
rs11024246	0.90[CHB][hapmap];1.00[EUR][1000 genomes]
rs11024251	0.82[CHB][hapmap]
rs11024262	0.91[CHB][hapmap]
rs11024263	0.91[CHB][hapmap];0.80[JPT][hapmap]
rs11024272	0.91[CHB][hapmap]
rs12225195	1.00[EUR][1000 genomes]
rs12576590	1.00[EUR][1000 genomes]
rs2018218	0.91[CHB][hapmap]
rs2302511	1.00[EUR][1000 genomes]
rs2354867	0.95[CHB][hapmap];0.82[ASN][1000 genomes]
rs4756887	0.91[CHB][hapmap]
rs4757499	1.00[EUR][1000 genomes]
rs5218	0.91[CHB][hapmap]
rs61555995	1.00[EUR][1000 genomes]
rs6416174	1.00[EUR][1000 genomes]
rs6486350	1.00[EUR][1000 genomes]
rs6486353	1.00[EUR][1000 genomes]
rs67771121	1.00[EUR][1000 genomes]
rs7113011	1.00[EUR][1000 genomes]
rs7122571	1.00[EUR][1000 genomes]
rs72632988	1.00[EUR][1000 genomes]
rs72632989	1.00[EUR][1000 genomes]
rs72632990	1.00[EUR][1000 genomes]
rs7934596	1.00[EUR][1000 genomes]
rs7945756	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469895	chr11:17368270-17584220	Weak transcription Bivalent Enhancer Genic enhancers Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17308200-17372600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr11:17320800-17372400	Weak transcription	GM12878-XiMat	blood
3	chr11:17334000-17371000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr11:17336200-17372600	Weak transcription	HUVEC	blood vessel
5	chr11:17354400-17373000	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr11:17354600-17372400	Weak transcription	Liver	Liver
7	chr11:17356000-17371000	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr11:17356000-17372200	Weak transcription	Primary T helper cells PMA-I stimulated	--
9	chr11:17356000-17372400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr11:17356000-17372600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr11:17356000-17372600	Weak transcription	Primary T helper cells fromperipheralblood	blood
12	chr11:17356000-17372800	Weak transcription	Primary T cells fromperipheralblood	blood
13	chr11:17356000-17372800	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr11:17356200-17372400	Weak transcription	Primary monocytes fromperipheralblood	blood
15	chr11:17356200-17372400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
16	chr11:17356200-17372400	Weak transcription	Monocytes-CD14+_RO01746	blood
17	chr11:17356200-17372600	Weak transcription	Adipose Nuclei	Adipose
18	chr11:17356200-17372800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr11:17356200-17372800	Weak transcription	Aorta	Aorta
20	chr11:17356200-17372800	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr11:17356200-17372800	Weak transcription	Ovary	ovary
22	chr11:17356200-17373000	Weak transcription	Left Ventricle	heart
23	chr11:17356400-17373000	Weak transcription	Esophagus	oesophagus
24	chr11:17359000-17372400	Weak transcription	Brain Germinal Matrix	brain
25	chr11:17359200-17372200	Weak transcription	Primary neutrophils fromperipheralblood	blood
26	chr11:17360800-17370600	Weak transcription	Thymus	Thymus
27	chr11:17364800-17371600	Strong transcription	Dnd41	blood
28	chr11:17365400-17372600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
29	chr11:17365600-17372600	Weak transcription	Osteobl	bone
30	chr11:17365800-17372800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr11:17365800-17372800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr11:17365800-17372800	Weak transcription	NH-A	brain
33	chr11:17366000-17372600	Weak transcription	NHLF	lung
34	chr11:17366000-17372800	Weak transcription	HMEC	breast
35	chr11:17366200-17372000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr11:17366200-17373000	Weak transcription	NHEK	skin
37	chr11:17366600-17372600	Weak transcription	Primary T cells from cord blood	blood
38	chr11:17368000-17370800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr11:17368400-17372800	Weak transcription	Primary hematopoietic stem cells	blood
40	chr11:17368800-17369800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr11:17368800-17371200	Strong transcription	Fetal Thymus	thymus
42	chr11:17369000-17370600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
43	chr11:17369600-17369800	Enhancers	HSMMtube	muscle
44	chr11:17369600-17373200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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