Variant report

Variant	rs10433514
Chromosome Location	chr3:82015839-82015840
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs11127748	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11127752	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11127753	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13314208	0.85[EUR][1000 genomes]
rs13325804	0.85[EUR][1000 genomes]
rs13326960	0.85[EUR][1000 genomes]
rs28698455	0.85[EUR][1000 genomes]
rs28815840	0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4073255	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4280658	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4465964	0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56911786	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs58381411	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58400916	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs58807347	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs66764013	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs67562454	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs67953383	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7635249	0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7636208	0.85[EUR][1000 genomes]
rs7637713	0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7644264	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7644824	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7646645	0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7649233	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9814843	0.85[EUR][1000 genomes]
rs9816313	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9817940	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9818589	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9834349	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9841918	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9843081	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9871195	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9871912	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9872129	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9872204	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9872449	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9875526	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9877352	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9877471	0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9882124	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999992	chr3:81693662-82015969	Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv536605	chr3:81693662-82015969	Flanking Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	esv2752870	chr3:82014410-82050310	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:82013200-82018600	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr3:82013600-82017400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr3:82013800-82016400	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr3:82014000-82016200	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr3:82014200-82016200	Enhancers	H1 Cell Line	embryonic stem cell
6	chr3:82014200-82018400	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr3:82014400-82017600	Weak transcription	Fetal Heart	heart
8	chr3:82014600-82017400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr3:82014600-82018000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr3:82015000-82017600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr3:82015200-82016000	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr3:82015600-82018200	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr3:82015800-82016200	Enhancers	H9 Cell Line	embryonic stem cell
14	chr3:82015800-82017600	Weak transcription	Brain Germinal Matrix	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links