Variant report

Variant	rs10433523
Chromosome Location	chr3:85094052-85094053
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:85093876..85094794-chr6:170459325..170460193,2	MCF-7	breast:
2	chr3:85091072..85092895-chr3:85093228..85096203,2	K562	blood:

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10490896	0.83[YRI][hapmap]
rs10490897	0.83[YRI][hapmap]
rs11127873	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11127876	1.00[CHB][hapmap];0.83[EUR][1000 genomes]
rs11127877	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11127880	0.86[CHB][hapmap];0.81[ASN][1000 genomes]
rs13059287	0.81[ASN][1000 genomes]
rs13061527	0.85[CHB][hapmap]
rs13072305	0.85[EUR][1000 genomes]
rs13078494	0.81[EUR][1000 genomes]
rs13097560	1.00[CHB][hapmap];0.83[EUR][1000 genomes]
rs13101042	0.82[EUR][1000 genomes]
rs1376938	0.85[CHB][hapmap]
rs1545926	0.86[CHB][hapmap]
rs1994315	0.81[EUR][1000 genomes]
rs2062431	0.85[EUR][1000 genomes]
rs2087011	0.82[EUR][1000 genomes]
rs2171140	0.82[EUR][1000 genomes]
rs2171141	0.83[ASN][1000 genomes]
rs2200461	0.85[EUR][1000 genomes]
rs2200464	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2220243	0.85[EUR][1000 genomes]
rs2220244	0.85[CHB][hapmap]
rs2326126	0.85[EUR][1000 genomes]
rs2326128	0.84[EUR][1000 genomes]
rs34201102	0.82[EUR][1000 genomes]
rs4410457	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4856559	0.81[EUR][1000 genomes]
rs4856560	0.85[EUR][1000 genomes]
rs62250629	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6549009	0.80[EUR][1000 genomes]
rs6549011	1.00[CEU][hapmap];0.87[JPT][hapmap];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6549012	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs66500121	0.82[EUR][1000 genomes]
rs6765011	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6768559	0.85[EUR][1000 genomes]
rs6775464	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6775752	1.00[CHB][hapmap];0.83[EUR][1000 genomes]
rs6788656	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6790864	0.91[CEU][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6791035	0.83[EUR][1000 genomes]
rs6796256	0.96[CEU][hapmap];0.86[CHB][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6796393	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6798922	0.96[CEU][hapmap];0.85[CHB][hapmap];0.82[JPT][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6801271	0.82[EUR][1000 genomes]
rs7623714	0.85[CHB][hapmap]
rs7632628	0.85[CHB][hapmap];0.83[ASN][1000 genomes]
rs7632909	0.83[ASN][1000 genomes]
rs7636138	1.00[CEU][hapmap];0.85[CHB][hapmap];0.81[JPT][hapmap];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7645049	0.83[ASN][1000 genomes]
rs7645952	0.85[EUR][1000 genomes]
rs7646739	0.81[ASN][1000 genomes]
rs7647649	0.82[EUR][1000 genomes]
rs9284802	0.82[EUR][1000 genomes]
rs9309969	0.81[EUR][1000 genomes]
rs9309970	0.96[CEU][hapmap];0.86[CHB][hapmap];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9814390	0.85[EUR][1000 genomes]
rs9814835	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9819278	0.86[CHB][hapmap]
rs9820587	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9839194	0.83[EUR][1000 genomes]
rs9855054	0.85[EUR][1000 genomes]
rs9869902	0.85[EUR][1000 genomes]
rs9875381	0.85[CHB][hapmap]
rs9883252	0.86[CHB][hapmap];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002058	chr3:84757044-85389876	Bivalent Enhancer Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv3419993	chr3:85030343-85663403	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
3	nsv492289	chr3:85066623-85319147	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv2753915	chr3:85071410-85624810	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:85091600-85095400	Weak transcription	Fetal Brain Male	brain
2	chr3:85091600-85095800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr3:85092200-85099400	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr3:85093600-85094400	Enhancers	Brain Substantia Nigra	brain

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