Variant report

Variant	rs10434707
Chromosome Location	chr5:92240880-92240881
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10063831	0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10078347	0.84[ASN][1000 genomes]
rs1010127	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12188632	0.86[AMR][1000 genomes]
rs13167254	0.87[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs17082694	0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1817741	0.87[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2879968	0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6874701	0.92[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6876411	0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs6895635	0.92[CEU][hapmap];0.85[CHB][hapmap];0.87[JPT][hapmap];0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7710387	0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7724557	0.87[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7736957	0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs9314210	0.84[ASN][1000 genomes]
rs963139	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015770	chr5:91911877-92498264	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv830398	chr5:92102826-92281331	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1022712	chr5:92191693-92415111	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1028930	chr5:92194772-92415111	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv823129	chr5:92222972-92280793	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:92238200-92243000	Weak transcription	Fetal Lung	lung
2	chr5:92238400-92241400	Weak transcription	Fetal Kidney	kidney
3	chr5:92240000-92243000	Weak transcription	NHDF-Ad	bronchial
4	chr5:92240200-92241400	Weak transcription	HepG2	liver
5	chr5:92240200-92242200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr5:92240200-92242600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr5:92240200-92242800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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