Variant report

Variant	rs10434831
Chromosome Location	chr6:12867558-12867559
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10434855	0.82[ASN][1000 genomes]
rs9369610	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9369625	1.00[EUR][1000 genomes]
rs9381466	1.00[EUR][1000 genomes]
rs9395163	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3521000	chr6:12561306-13128519	Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv3521001	chr6:12561306-13128519	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv830587	chr6:12769661-12939875	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv830588	chr6:12793530-12972493	Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1027534	chr6:12858048-12877597	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:12853400-12870000	Weak transcription	Brain Germinal Matrix	brain
2	chr6:12865400-12867800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr6:12865800-12867800	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr6:12866000-12867600	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr6:12866000-12867800	Enhancers	H9 Cell Line	embryonic stem cell
6	chr6:12866000-12867800	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr6:12866200-12867600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr6:12866200-12868000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr6:12866200-12868000	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr6:12866600-12868400	Enhancers	H1 Cell Line	embryonic stem cell
11	chr6:12867000-12867600	Enhancers	Brain Anterior Caudate	brain
12	chr6:12867200-12867600	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr6:12867200-12868000	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr6:12867200-12873600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr6:12867200-12874800	Weak transcription	Fetal Brain Female	brain
16	chr6:12867400-12867800	Enhancers	iPS-20b Cell Line	embryonic stem cell
17	chr6:12867400-12887600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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