Variant report

Variant	rs10435587
Chromosome Location	chr8:54663279-54663280
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:54662153..54663773-chr8:54755567..54757091,2	MCF-7	breast:
2	chr8:54654853..54656684-chr8:54661881..54664357,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000047249	Chromatin interaction

Extended variants
information (count: 94 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:90)

rs_ID	r²[population]
rs1031979	1.00[CEU][hapmap];0.93[CHD][hapmap];0.85[JPT][hapmap];0.82[MEX][hapmap];0.92[ASN][1000 genomes]
rs1031980	1.00[ASW][hapmap];1.00[CEU][hapmap];0.93[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10504158	0.82[YRI][hapmap]
rs11994467	0.88[ASN][1000 genomes]
rs11996300	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12056486	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12056719	1.00[CEU][hapmap];0.98[CHD][hapmap];0.95[GIH][hapmap];0.90[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12234972	0.85[CEU][hapmap];0.98[CHD][hapmap];0.89[JPT][hapmap];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13276766	0.85[ASN][1000 genomes]
rs1552148	1.00[CEU][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];0.82[MEX][hapmap];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16919507	1.00[CEU][hapmap];0.82[CHD][hapmap];0.82[MEX][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs16919508	1.00[ASW][hapmap];1.00[CEU][hapmap];0.80[CHD][hapmap];0.95[GIH][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16919522	1.00[CEU][hapmap];0.98[CHD][hapmap];0.95[JPT][hapmap];0.82[MEX][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16919534	1.00[CEU][hapmap];0.98[CHD][hapmap];0.86[GIH][hapmap];0.95[JPT][hapmap];0.91[MEX][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16919537	1.00[CEU][hapmap];0.94[JPT][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16919541	1.00[CEU][hapmap];0.95[JPT][hapmap];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16919563	1.00[CEU][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16919571	1.00[CEU][hapmap];0.93[CHD][hapmap];0.95[JPT][hapmap];0.91[MEX][hapmap];0.93[ASN][1000 genomes]
rs16919573	1.00[CEU][hapmap];0.91[CHD][hapmap];0.85[JPT][hapmap];0.82[MEX][hapmap];0.92[ASN][1000 genomes]
rs1872063	1.00[ASW][hapmap];1.00[CEU][hapmap];0.91[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1905061	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2128150	1.00[CEU][hapmap];0.98[CHD][hapmap];0.95[JPT][hapmap];0.81[MEX][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2170444	1.00[CEU][hapmap];0.91[CHD][hapmap];0.85[JPT][hapmap];0.82[MEX][hapmap];0.92[ASN][1000 genomes]
rs2376011	1.00[CEU][hapmap];0.81[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];0.82[MEX][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3735831	1.00[CEU][hapmap];0.93[CHD][hapmap];0.89[JPT][hapmap];0.82[MEX][hapmap];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3757954	1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs41321146	1.00[CEU][hapmap];0.98[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4236945	1.00[ASW][hapmap];1.00[CEU][hapmap];0.93[CHD][hapmap];0.95[GIH][hapmap];0.90[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4737192	1.00[CEU][hapmap];0.93[CHD][hapmap];0.95[JPT][hapmap];0.82[MEX][hapmap];0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4737518	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4737554	1.00[CEU][hapmap];0.95[CHD][hapmap];0.86[GIH][hapmap];0.90[JPT][hapmap];1.00[MEX][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4737558	1.00[CEU][hapmap];0.95[CHD][hapmap];0.86[GIH][hapmap];0.90[JPT][hapmap];1.00[MEX][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4737753	0.82[MEX][hapmap]
rs4737761	0.85[CEU][hapmap]
rs4737764	1.00[ASW][hapmap];1.00[CEU][hapmap];0.93[CHD][hapmap];0.95[GIH][hapmap];0.90[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4737765	1.00[CEU][hapmap];0.93[CHD][hapmap];0.95[JPT][hapmap];0.82[MEX][hapmap];0.94[ASN][1000 genomes]
rs4737821	1.00[CEU][hapmap];0.93[CHD][hapmap];0.95[JPT][hapmap];0.91[MEX][hapmap];0.90[YRI][hapmap];0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4737974	1.00[CEU][hapmap];0.91[MEX][hapmap];0.84[EUR][1000 genomes]
rs4738025	1.00[CEU][hapmap]
rs4738027	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs4738470	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4738646	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4738701	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4738884	1.00[CEU][hapmap];0.98[CHD][hapmap];0.86[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4738916	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55682919	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs55876329	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs55964335	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs56818292	0.93[ASN][1000 genomes]
rs56956173	0.84[EUR][1000 genomes]
rs56973376	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57071607	0.92[EUR][1000 genomes]
rs57550901	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs58473841	0.97[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs58558817	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58970885	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61070518	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6473893	1.00[CEU][hapmap];0.82[MEX][hapmap]
rs6984257	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6986372	0.82[ASW][hapmap];0.85[CEU][hapmap];0.85[JPT][hapmap];1.00[MEX][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6987427	1.00[CEU][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];0.82[MEX][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6988009	1.00[CEU][hapmap];0.90[YRI][hapmap];0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6988082	1.00[CEU][hapmap];0.80[CHD][hapmap];0.86[GIH][hapmap];1.00[MEX][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6988808	1.00[ASW][hapmap];1.00[CEU][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.92[EUR][1000 genomes]
rs6988812	0.89[JPT][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6994851	1.00[CEU][hapmap];0.82[MEX][hapmap]
rs6997003	1.00[CEU][hapmap];0.95[JPT][hapmap];0.90[YRI][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6997127	1.00[CEU][hapmap];0.93[CHD][hapmap];0.95[JPT][hapmap];0.91[MEX][hapmap];0.95[ASN][1000 genomes]
rs6999454	1.00[CEU][hapmap];0.98[CHD][hapmap];0.90[JPT][hapmap];0.82[MEX][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7005696	1.00[CEU][hapmap];0.82[MEX][hapmap]
rs7006934	0.85[CEU][hapmap]
rs7009705	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7017291	0.82[YRI][hapmap]
rs7018162	1.00[CEU][hapmap];0.94[ASN][1000 genomes]
rs73587624	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73587627	0.97[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73680321	0.84[EUR][1000 genomes]
rs73682549	0.83[EUR][1000 genomes]
rs73682551	0.83[EUR][1000 genomes]
rs73682552	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73682555	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73682568	0.96[ASN][1000 genomes]
rs73682570	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7387704	0.91[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs7843701	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];0.90[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs900163	1.00[CEU][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];0.82[MEX][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs958268	1.00[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9643480	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9643819	1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9643820	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758159	chr8:54474589-54737473	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv2759616	chr8:54474589-54737473	Weak transcription Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1021775	chr8:54631303-54827173	Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv539621	chr8:54631303-54827173	Weak transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:54627400-54663400	Weak transcription	Hela-S3	cervix
2	chr8:54642600-54672800	Weak transcription	Right Ventricle	heart
3	chr8:54645600-54671400	Weak transcription	NHLF	lung
4	chr8:54646000-54672600	Weak transcription	Psoas Muscle	Psoas
5	chr8:54647200-54666600	Weak transcription	Brain Substantia Nigra	brain
6	chr8:54647600-54666600	Weak transcription	A549	lung
7	chr8:54648600-54667200	Weak transcription	HSMMtube	muscle
8	chr8:54650200-54663400	Weak transcription	Brain Germinal Matrix	brain
9	chr8:54650200-54671000	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr8:54650200-54707400	Weak transcription	HUVEC	blood vessel
11	chr8:54651400-54670400	Weak transcription	Fetal Brain Male	brain
12	chr8:54652800-54673000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr8:54653400-54670000	Strong transcription	Primary monocytes fromperipheralblood	blood
14	chr8:54655400-54663400	Weak transcription	Rectal Smooth Muscle	rectum
15	chr8:54655400-54669600	Weak transcription	Esophagus	oesophagus
16	chr8:54655400-54703600	Weak transcription	Brain Angular Gyrus	brain
17	chr8:54655600-54665600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
18	chr8:54655600-54666800	Weak transcription	Brain Hippocampus Middle	brain
19	chr8:54655600-54666800	Weak transcription	Fetal Muscle Trunk	muscle
20	chr8:54655600-54667000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr8:54655600-54672400	Weak transcription	Fetal Heart	heart
22	chr8:54655800-54671000	Weak transcription	Fetal Brain Female	brain
23	chr8:54655800-54726000	Weak transcription	Colonic Mucosa	Colon
24	chr8:54656200-54666400	Weak transcription	Placenta	Placenta
25	chr8:54656200-54666800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr8:54656400-54663400	Weak transcription	HUES6 Cell Line	embryonic stem cell
27	chr8:54656400-54663600	Weak transcription	Osteobl	bone
28	chr8:54656400-54666000	Weak transcription	Fetal Stomach	stomach
29	chr8:54656400-54666000	Weak transcription	HSMM	muscle
30	chr8:54656400-54666600	Weak transcription	Fetal Muscle Leg	muscle
31	chr8:54656400-54666800	Weak transcription	Skeletal Muscle Male	skeletal muscle
32	chr8:54656400-54667000	Weak transcription	Spleen	Spleen
33	chr8:54656400-54669600	Weak transcription	Gastric	stomach
34	chr8:54656400-54672600	Weak transcription	Small Intestine	intestine
35	chr8:54656600-54666400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr8:54656600-54676200	Weak transcription	Aorta	Aorta
37	chr8:54656800-54667000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr8:54656800-54669600	Weak transcription	Skeletal Muscle Female	skeletal muscle
39	chr8:54656800-54680200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
40	chr8:54657000-54663400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
41	chr8:54657000-54666000	Weak transcription	Thymus	Thymus
42	chr8:54657000-54666600	Weak transcription	Ovary	ovary
43	chr8:54657000-54672600	Weak transcription	HepG2	liver
44	chr8:54657200-54664400	Weak transcription	Primary neutrophils fromperipheralblood	blood
45	chr8:54657200-54666600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
46	chr8:54657400-54666600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
47	chr8:54657400-54671000	Weak transcription	Colon Smooth Muscle	Colon
48	chr8:54657600-54663600	Weak transcription	Left Ventricle	heart
49	chr8:54657600-54663800	Weak transcription	Sigmoid Colon	Sigmoid Colon
50	chr8:54658200-54665600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

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