Variant report

Variant	rs10441501
Chromosome Location	chr8:99500750-99500751
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 68 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10086870	0.83[JPT][hapmap];0.84[EUR][1000 genomes]
rs10096329	0.82[JPT][hapmap]
rs10098835	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10099978	0.81[CEU][hapmap];0.88[MEX][hapmap];0.93[TSI][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10100346	0.96[CEU][hapmap];0.81[JPT][hapmap]
rs10100378	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10100546	0.81[CEU][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10100577	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10101919	0.83[JPT][hapmap]
rs10111264	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10955174	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10955175	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10955176	0.90[CHB][hapmap];1.00[CHD][hapmap];0.83[MKK][hapmap];0.93[TSI][hapmap];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10955177	0.96[CEU][hapmap];0.83[JPT][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10955178	0.96[CEU][hapmap];0.82[JPT][hapmap];0.86[YRI][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10955179	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10955180	0.83[JPT][hapmap]
rs10955181	0.83[JPT][hapmap];0.88[MEX][hapmap];0.83[TSI][hapmap]
rs10955184	0.83[CEU][hapmap];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10955185	0.81[CEU][hapmap];0.83[JPT][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11781352	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11985382	0.81[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.83[MKK][hapmap];0.93[TSI][hapmap];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11994001	0.93[ASN][1000 genomes]
rs12056323	0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.91[TSI][hapmap];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12541026	0.81[CEU][hapmap];0.82[JPT][hapmap];0.87[EUR][1000 genomes]
rs12542022	0.81[CEU][hapmap];0.91[TSI][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12542931	0.83[JPT][hapmap];0.93[TSI][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12544768	0.81[CEU][hapmap];0.83[JPT][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12547922	0.81[CEU][hapmap];0.83[JPT][hapmap];0.92[MEX][hapmap];0.93[TSI][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12548477	0.81[CEU][hapmap];0.83[JPT][hapmap];0.92[MEX][hapmap];0.93[TSI][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12550198	0.81[CEU][hapmap];0.83[JPT][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12677171	0.81[EUR][1000 genomes]
rs13257475	0.82[JPT][hapmap]
rs13270534	0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.93[ASN][1000 genomes]
rs16892236	0.81[CEU][hapmap];0.89[TSI][hapmap]
rs16896996	0.88[ASN][1000 genomes]
rs16897061	0.87[TSI][hapmap]
rs16897076	0.82[JPT][hapmap]
rs1893884	0.83[ASW][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.83[MEX][hapmap];0.95[MKK][hapmap];0.87[TSI][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2001728	0.89[ASN][1000 genomes]
rs34580087	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs3802198	0.81[CEU][hapmap];0.83[JPT][hapmap];0.88[MEX][hapmap];0.95[TSI][hapmap];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4130753	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];0.96[MEX][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4301421	0.81[CEU][hapmap];0.83[JPT][hapmap];0.88[MEX][hapmap];0.95[TSI][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4332102	0.81[CEU][hapmap];0.81[JPT][hapmap];0.98[TSI][hapmap];0.87[EUR][1000 genomes]
rs4348458	0.80[MEX][hapmap]
rs4370499	0.89[TSI][hapmap];0.81[AMR][1000 genomes]
rs4388428	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.96[MEX][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4407850	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4618666	0.81[EUR][1000 genomes]
rs4734406	1.00[CEU][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4734407	0.81[CEU][hapmap];0.83[JPT][hapmap];0.92[MEX][hapmap];0.93[TSI][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4735564	0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.91[TSI][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4995528	1.00[ASW][hapmap];1.00[CEU][hapmap];0.97[GIH][hapmap];1.00[LWK][hapmap];0.88[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62532757	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6651181	0.82[JPT][hapmap];0.83[TSI][hapmap]
rs6985600	0.90[ASN][1000 genomes]
rs6993480	0.80[YRI][hapmap];0.84[EUR][1000 genomes]
rs7007360	1.00[ASW][hapmap];1.00[CEU][hapmap];0.97[GIH][hapmap];1.00[LWK][hapmap];0.88[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7011763	0.89[ASW][hapmap];0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.96[MEX][hapmap];0.84[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7013445	0.83[YRI][hapmap]
rs7015739	0.81[CEU][hapmap];0.83[JPT][hapmap];0.88[MEX][hapmap];0.95[TSI][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7815227	1.00[CEU][hapmap];0.82[CHB][hapmap];0.83[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7845395	0.81[CEU][hapmap];0.83[JPT][hapmap];0.88[MEX][hapmap];0.95[TSI][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7845750	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9642951	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027362	chr8:99469281-99715845	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv539689	chr8:99469281-99715845	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10441501	OSR2	cis	cerebellum	SCAN

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:99461800-99525000	Weak transcription	Psoas Muscle	Psoas
2	chr8:99479600-99504600	Weak transcription	NHEK	skin
3	chr8:99479800-99502800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr8:99486600-99536000	Weak transcription	Placenta	Placenta
5	chr8:99490400-99547600	Weak transcription	Ovary	ovary
6	chr8:99491400-99504800	Weak transcription	HSMMtube	muscle
7	chr8:99492600-99505600	Weak transcription	HSMM	muscle
8	chr8:99498000-99502600	Weak transcription	Primary hematopoietic stem cells	blood
9	chr8:99498600-99501000	Enhancers	Fetal Lung	lung
10	chr8:99498800-99501000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr8:99499600-99502800	Weak transcription	NH-A	brain
12	chr8:99499600-99504000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr8:99500000-99501400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr8:99500200-99502200	Weak transcription	A549	lung
15	chr8:99500200-99502600	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr8:99500200-99502600	Weak transcription	Osteobl	bone
17	chr8:99500200-99502800	Weak transcription	NHDF-Ad	bronchial
18	chr8:99500200-99504400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr8:99500200-99517600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr8:99500400-99502600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr8:99500400-99505600	Weak transcription	NHLF	lung
22	chr8:99500400-99558800	Weak transcription	Aorta	Aorta

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