Variant report

Variant	rs10444700
Chromosome Location	chr14:32894106-32894107
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12432844	0.90[ASN][1000 genomes]
rs17099047	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17099069	0.90[ASN][1000 genomes]
rs17408253	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17408295	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17486543	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17486760	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2383301	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2891192	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs57050663	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs59004359	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8014419	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758352	chr14:32858480-33016442	Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv2759978	chr14:32858480-33016442	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:32876800-32895800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr14:32887800-32895800	Weak transcription	Left Ventricle	heart
3	chr14:32887800-32901800	Weak transcription	Ovary	ovary
4	chr14:32888800-32895200	Weak transcription	Brain Hippocampus Middle	brain
5	chr14:32888800-32895800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr14:32889600-32896000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr14:32890000-32895800	Weak transcription	Brain Angular Gyrus	brain
8	chr14:32890000-32895800	Weak transcription	Brain Cingulate Gyrus	brain
9	chr14:32891000-32895800	Weak transcription	Brain Anterior Caudate	brain
10	chr14:32891200-32894600	Weak transcription	Brain Substantia Nigra	brain
11	chr14:32891200-32895800	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr14:32891400-32895800	Weak transcription	NH-A	brain
13	chr14:32891800-32899400	Weak transcription	Osteobl	bone
14	chr14:32892000-32896200	Weak transcription	Right Ventricle	heart
15	chr14:32892000-32902800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr14:32892600-32895200	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr14:32892800-32895800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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