Variant report

Variant	rs10448159
Chromosome Location	chr9:17751937-17751938
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10491540	0.90[CEU][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10810850	0.91[CEU][hapmap];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10963249	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10963254	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10963258	0.90[CEU][hapmap];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10963261	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10963262	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10963263	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10963264	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10963265	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10963267	0.88[CEU][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10963268	0.91[CEU][hapmap];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10963270	0.86[CEU][hapmap]
rs10963272	0.86[CEU][hapmap]
rs1114790	1.00[CEU][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12005953	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12377526	0.86[CEU][hapmap]
rs12378332	0.86[CEU][hapmap]
rs12379450	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12380227	0.95[CEU][hapmap]
rs13284953	0.85[EUR][1000 genomes]
rs13291415	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13291891	0.98[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1536068	0.91[CEU][hapmap]
rs2383041	0.88[CEU][hapmap]
rs34106908	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34609165	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35911294	0.91[EUR][1000 genomes]
rs36045574	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs41305339	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62549703	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7044550	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7865921	0.86[CEU][hapmap]
rs9406734	0.91[CEU][hapmap]
rs9406736	0.91[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892675	chr9:17694823-17790526	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv613706	chr9:17718918-18090934	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv613707	chr9:17720175-18070475	Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv613708	chr9:17720175-18072085	Enhancers Bivalent/Poised TSS Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1033892	chr9:17734224-17757581	Weak transcription Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
6	nsv1034673	chr9:17739006-17916606	Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv1023089	chr9:17748811-17919574	Weak transcription Bivalent Enhancer Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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