Variant report

Variant	rs10452610
Chromosome Location	chr6:53559094-53559095
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs13220574	0.94[AFR][1000 genomes]
rs34069307	1.00[ASN][1000 genomes]
rs34274914	0.92[ASN][1000 genomes]
rs35360324	1.00[ASN][1000 genomes]
rs35610624	0.92[ASN][1000 genomes]
rs4128134	0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4437470	0.92[ASN][1000 genomes]
rs6899886	0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6920831	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034955	chr6:53447607-53931055	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:53543000-53559800	Weak transcription	Pancreas	Pancrea
2	chr6:53552400-53559800	Weak transcription	Left Ventricle	heart
3	chr6:53552400-53559800	Weak transcription	Right Atrium	heart
4	chr6:53556000-53560200	Enhancers	Ovary	ovary
5	chr6:53556600-53559800	Weak transcription	Right Ventricle	heart
6	chr6:53557200-53560200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr6:53557400-53559400	Weak transcription	Fetal Heart	heart
8	chr6:53557400-53565800	Weak transcription	Psoas Muscle	Psoas
9	chr6:53557800-53561200	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr6:53558000-53566200	Weak transcription	Fetal Muscle Leg	muscle
11	chr6:53558800-53559800	Enhancers	HepG2	liver
12	chr6:53558800-53561600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr6:53558800-53562000	Enhancers	Fetal Intestine Large	intestine
14	chr6:53558800-53562000	Enhancers	Fetal Intestine Small	intestine
15	chr6:53559000-53560600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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