Variant report

Variant	rs10453054
Chromosome Location	chr8:36457195-36457196
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 124 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:118)

rs_ID	r²[population]
rs10503989	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10503992	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1157478	1.00[EUR][1000 genomes]
rs16875874	1.00[EUR][1000 genomes]
rs16884968	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16884969	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16884977	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16884979	1.00[EUR][1000 genomes]
rs16884990	1.00[EUR][1000 genomes]
rs16884995	1.00[EUR][1000 genomes]
rs16884996	1.00[EUR][1000 genomes]
rs16885001	1.00[EUR][1000 genomes]
rs16885015	1.00[EUR][1000 genomes]
rs16885016	1.00[EUR][1000 genomes]
rs16885018	1.00[EUR][1000 genomes]
rs16885021	1.00[EUR][1000 genomes]
rs16885026	1.00[EUR][1000 genomes]
rs16885028	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16885037	1.00[EUR][1000 genomes]
rs16885107	1.00[EUR][1000 genomes]
rs16885108	1.00[EUR][1000 genomes]
rs16885109	1.00[EUR][1000 genomes]
rs16885113	1.00[EUR][1000 genomes]
rs16885115	1.00[EUR][1000 genomes]
rs16885121	1.00[EUR][1000 genomes]
rs16885123	1.00[EUR][1000 genomes]
rs16885125	1.00[EUR][1000 genomes]
rs16885130	1.00[EUR][1000 genomes]
rs16885138	1.00[EUR][1000 genomes]
rs16885140	1.00[EUR][1000 genomes]
rs16885145	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16885153	1.00[EUR][1000 genomes]
rs16885155	0.87[AFR][1000 genomes]
rs16885190	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16885198	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16892114	1.00[EUR][1000 genomes]
rs17382352	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2000448	1.00[EUR][1000 genomes]
rs2068440	1.00[EUR][1000 genomes]
rs2154461	1.00[EUR][1000 genomes]
rs2406724	1.00[EUR][1000 genomes]
rs3925927	1.00[EUR][1000 genomes]
rs56803225	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57055411	1.00[EUR][1000 genomes]
rs57136274	1.00[EUR][1000 genomes]
rs57308719	1.00[EUR][1000 genomes]
rs57758553	1.00[EUR][1000 genomes]
rs57990211	1.00[EUR][1000 genomes]
rs58431274	1.00[EUR][1000 genomes]
rs58572029	1.00[EUR][1000 genomes]
rs59143074	1.00[EUR][1000 genomes]
rs59174733	1.00[EUR][1000 genomes]
rs59261730	1.00[EUR][1000 genomes]
rs59640681	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59802891	1.00[EUR][1000 genomes]
rs60883951	1.00[EUR][1000 genomes]
rs61124681	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61338707	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6982709	1.00[EUR][1000 genomes]
rs6983386	1.00[EUR][1000 genomes]
rs6984795	1.00[EUR][1000 genomes]
rs6985764	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6985948	1.00[EUR][1000 genomes]
rs7009892	1.00[EUR][1000 genomes]
rs7010563	1.00[EUR][1000 genomes]
rs7013702	1.00[EUR][1000 genomes]
rs7018078	1.00[EUR][1000 genomes]
rs73578626	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73578627	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73578629	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73578630	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73578637	1.00[EUR][1000 genomes]
rs73578638	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73578644	1.00[EUR][1000 genomes]
rs73578645	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73578649	1.00[EUR][1000 genomes]
rs73578650	1.00[EUR][1000 genomes]
rs73578653	1.00[EUR][1000 genomes]
rs73582954	1.00[EUR][1000 genomes]
rs73582970	1.00[EUR][1000 genomes]
rs73582973	1.00[EUR][1000 genomes]
rs73582975	1.00[EUR][1000 genomes]
rs73582980	1.00[EUR][1000 genomes]
rs73582984	1.00[EUR][1000 genomes]
rs73584406	1.00[EUR][1000 genomes]
rs73585297	1.00[EUR][1000 genomes]
rs73585302	1.00[EUR][1000 genomes]
rs73587404	1.00[EUR][1000 genomes]
rs73587406	1.00[EUR][1000 genomes]
rs73587409	1.00[EUR][1000 genomes]
rs73587410	1.00[EUR][1000 genomes]
rs73587414	1.00[EUR][1000 genomes]
rs73589513	1.00[EUR][1000 genomes]
rs73589516	1.00[EUR][1000 genomes]
rs73589517	1.00[EUR][1000 genomes]
rs73589521	1.00[EUR][1000 genomes]
rs73597492	1.00[EUR][1000 genomes]
rs73597493	1.00[EUR][1000 genomes]
rs73597495	1.00[EUR][1000 genomes]
rs73597496	1.00[EUR][1000 genomes]
rs73597498	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73597500	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73599424	1.00[EUR][1000 genomes]
rs73599431	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73599444	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73601408	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73601409	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73601438	1.00[EUR][1000 genomes]
rs73601439	1.00[EUR][1000 genomes]
rs73601444	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73601445	1.00[EUR][1000 genomes]
rs73601448	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73601450	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73601454	1.00[EUR][1000 genomes]
rs73601455	1.00[EUR][1000 genomes]
rs73601458	1.00[EUR][1000 genomes]
rs73601462	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73601464	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023238	chr8:36252557-36530138	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv1034824	chr8:36398752-36530138	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1023001	chr8:36417309-36482111	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1016306	chr8:36423652-36480301	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv831287	chr8:36430788-36605374	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1027937	chr8:36434982-36572189	Enhancers Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:36457000-36457600	Enhancers	Small Intestine	intestine

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