Variant report

Variant	rs10455322
Chromosome Location	chr6:77593793-77593794
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:77586174..77588444-chr6:77591839..77593898,2	MCF-7	breast:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs11969816	1.00[AFR][1000 genomes]
rs12174426	1.00[AFR][1000 genomes]
rs12191933	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12192489	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12661295	1.00[AFR][1000 genomes]
rs13211725	1.00[AFR][1000 genomes]
rs1335436	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1414184	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs1462469	1.00[AFR][1000 genomes]
rs1570260	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs1598865	1.00[AFR][1000 genomes]
rs1598866	1.00[AFR][1000 genomes]
rs1819550	0.93[EUR][1000 genomes]
rs1981128	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs34264360	1.00[AFR][1000 genomes]
rs35236070	1.00[AFR][1000 genomes]
rs35512517	1.00[AFR][1000 genomes]
rs68040563	1.00[AFR][1000 genomes]
rs68139108	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs68172709	1.00[AFR][1000 genomes]
rs9341621	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs9343499	1.00[AFR][1000 genomes]
rs9343513	1.00[AFR][1000 genomes]
rs9350675	1.00[AFR][1000 genomes]
rs9350677	1.00[AFR][1000 genomes]
rs9350684	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs9350686	1.00[AFR][1000 genomes]
rs9352390	1.00[AFR][1000 genomes]
rs9352400	1.00[AFR][1000 genomes]
rs9352403	1.00[AFR][1000 genomes]
rs9359223	1.00[AFR][1000 genomes]
rs9359230	1.00[AFR][1000 genomes]
rs9361152	1.00[AFR][1000 genomes]
rs9361156	1.00[AFR][1000 genomes]
rs9361157	1.00[AFR][1000 genomes]
rs9361162	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019520	chr6:77355212-77875164	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv538321	chr6:77355212-77875164	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv830701	chr6:77509152-77678602	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv432924	chr6:77566201-77617213	Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
5	esv3387181	chr6:77571282-77594741	Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
6	nsv886222	chr6:77577055-77734250	ZNF genes & repeats Enhancers Weak transcription Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
7	nsv1017082	chr6:77585310-78258237	Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv603806	chr6:77587889-77787815	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv1021812	chr6:77589219-77792085	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:77591200-77595200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr6:77591400-77596600	Weak transcription	Pancreas	Pancrea
3	chr6:77593400-77594200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr6:77593600-77594000	Enhancers	H1 Cell Line	embryonic stem cell

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