Variant report
| Variant | rs10456708 |
|---|---|
| Chromosome Location | chr6:55228053-55228054 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs10456709 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs13203638 | 0.81[CHB][hapmap];0.85[JPT][hapmap] |
| rs1502194 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs3963 | 0.81[JPT][hapmap] |
| rs4715529 | 0.81[JPT][hapmap] |
| rs4715530 | 0.81[JPT][hapmap] |
| rs6900362 | 0.81[JPT][hapmap] |
| rs6900899 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs6917737 | 0.81[CHB][hapmap];0.85[JPT][hapmap] |
| rs7452656 | 0.85[JPT][hapmap] |
| rs7743404 | 0.86[JPT][hapmap] |
| rs7756270 | 0.81[JPT][hapmap] |
| rs7775056 | 0.82[JPT][hapmap] |
| rs905275 | 0.90[CHB][hapmap];1.00[JPT][hapmap] |
| rs9296780 | 0.81[JPT][hapmap] |
| rs9296781 | 0.93[CEU][hapmap] |
| rs9349776 | 0.84[CHB][hapmap];0.81[JPT][hapmap] |
| rs9370414 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs9370416 | 0.90[CHB][hapmap];0.90[JPT][hapmap] |
| rs9370417 | 0.89[CHB][hapmap];0.86[JPT][hapmap] |
| rs9382486 | 0.82[JPT][hapmap] |
| rs9382487 | 0.86[JPT][hapmap] |
| rs9396082 | 0.85[JPT][hapmap] |
| rs973052 | 0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv885903 | chr6:55142337-55344782 | Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 2 | nsv1034960 | chr6:55152655-55243149 | Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS | TF binding regionCpG island | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv885904 | chr6:55156812-55344782 | Enhancers Active TSS ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 4 | nsv1034037 | chr6:55222409-56069600 | Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 7 gene(s) | inside rSNPs | diseases |
| 5 | esv3400100 | chr6:55228042-55250271 | Weak transcription Enhancers Active TSS | n/a | n/a | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
