Variant report

Variant	rs10457859
Chromosome Location	chr6:150496990-150496991
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:150494832..150497626-chr6:150501438..150503666,2	K562	blood:
2	chr6:150495902..150498289-chr6:150504016..150506860,2	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12191405	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12201610	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12211097	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12211587	0.87[EUR][1000 genomes]
rs59114788	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6907224	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs746984	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9478557	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9479904	0.95[EUR][1000 genomes]
rs9479919	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886770	chr6:150395424-150499889	Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Weak transcription Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150486200-150497400	Weak transcription	Right Atrium	heart
2	chr6:150488200-150497800	Weak transcription	Colonic Mucosa	Colon
3	chr6:150491400-150497200	Weak transcription	NHEK	skin
4	chr6:150491400-150497600	Weak transcription	K562	blood
5	chr6:150491400-150506400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr6:150491600-150501400	Weak transcription	HMEC	breast
7	chr6:150493600-150497200	Weak transcription	Pancreas	Pancrea
8	chr6:150494000-150497200	Weak transcription	Lung	lung
9	chr6:150494200-150497200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr6:150494400-150501000	Weak transcription	Fetal Brain Female	brain
11	chr6:150496000-150497200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr6:150496200-150497200	Enhancers	Skeletal Muscle Male	skeletal muscle
13	chr6:150496200-150498200	Enhancers	Rectal Mucosa Donor 31	rectum
14	chr6:150496200-150498200	Enhancers	Small Intestine	intestine
15	chr6:150496200-150499600	Enhancers	Fetal Intestine Large	intestine
16	chr6:150496200-150499600	Enhancers	Fetal Intestine Small	intestine
17	chr6:150496200-150499600	Enhancers	Right Ventricle	heart
18	chr6:150496200-150499600	Enhancers	Sigmoid Colon	Sigmoid Colon
19	chr6:150496200-150499600	Enhancers	Skeletal Muscle Female	skeletal muscle
20	chr6:150496400-150499600	Enhancers	Fetal Muscle Leg	muscle
21	chr6:150496600-150497000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr6:150496600-150497200	Flanking Active TSS	Fetal Heart	heart
23	chr6:150496600-150497200	Weak transcription	Left Ventricle	heart
24	chr6:150496600-150497400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr6:150496800-150497000	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
26	chr6:150496800-150497800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr6:150496800-150498200	Weak transcription	Pancreatic Islets	Pancreatic Islet
28	chr6:150496800-150498200	Enhancers	Stomach Mucosa	stomach
29	chr6:150496800-150499400	Enhancers	Duodenum Mucosa	Duodenum
30	chr6:150496800-150499600	Enhancers	Psoas Muscle	Psoas

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