Variant report

Variant	rs10457930
Chromosome Location	chr6:101905345-101905346
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs12204255	1.00[ASN][1000 genomes]
rs12208565	1.00[ASN][1000 genomes]
rs2579929	1.00[ASN][1000 genomes]
rs2787573	1.00[ASN][1000 genomes]
rs2852497	1.00[ASN][1000 genomes]
rs2852505	1.00[ASN][1000 genomes]
rs2852510	1.00[ASN][1000 genomes]
rs2852513	1.00[ASN][1000 genomes]
rs2852514	1.00[ASN][1000 genomes]
rs4285325	1.00[ASN][1000 genomes]
rs496596	1.00[ASN][1000 genomes]
rs503387	1.00[ASN][1000 genomes]
rs570556	1.00[ASN][1000 genomes]
rs596621	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs62419629	1.00[ASN][1000 genomes]
rs62421387	1.00[ASN][1000 genomes]
rs626262	1.00[ASN][1000 genomes]
rs632956	1.00[ASN][1000 genomes]
rs643101	1.00[ASN][1000 genomes]
rs658318	1.00[ASN][1000 genomes]
rs661064	1.00[ASN][1000 genomes]
rs687497	1.00[ASN][1000 genomes]
rs697438	1.00[ASN][1000 genomes]
rs72958632	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020400	chr6:101172705-101981665	Weak transcription Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv538390	chr6:101172705-101981665	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv886459	chr6:101880376-101951502	Weak transcription Enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv886460	chr6:101890395-101951502	Enhancers Weak transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:101902400-101907800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr6:101903400-101921000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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