Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10064251	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10072317	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11135387	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12152903	0.95[ASN][1000 genomes]
rs1471289	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs187931	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2343708	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs269696	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs269700	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs269701	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs269702	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs269703	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs269706	0.82[ASN][1000 genomes]
rs269707	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4869111	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4869195	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6420123	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs898597	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9314085	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs984645	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830400	chr5:92515026-92738896	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv830401	chr5:92518294-92703611	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:92677000-92685400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr5:92683600-92684800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr5:92683600-92684800	Enhancers	Fetal Muscle Trunk	muscle
4	chr5:92683600-92685600	Enhancers	Muscle Satellite Cultured Cells	--
5	chr5:92683800-92685000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr5:92683800-92686400	Enhancers	HMEC	breast
7	chr5:92684000-92684600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr5:92684000-92684600	Enhancers	Fetal Muscle Leg	muscle
9	chr5:92684000-92684800	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr5:92684000-92686400	Enhancers	HSMM	muscle
11	chr5:92684200-92684600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr5:92684200-92684600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr5:92684200-92684800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr5:92684200-92686000	Enhancers	NH-A	brain
15	chr5:92684400-92684800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr5:92684400-92684800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr5:92684400-92685800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr5:92684400-92686000	Enhancers	Osteobl	bone
19	chr5:92684400-92686200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr5:92684400-92686200	Enhancers	Hela-S3	cervix

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