Variant report

Variant	rs10464611
Chromosome Location	chr7:102421508-102421509
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11974748	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12672488	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4489255	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56356294	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73406218	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs7800387	0.87[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs9641299	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9691949	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016563	chr7:101912320-102695860	Weak transcription Genic enhancers Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
2	nsv1028438	chr7:101912320-102704135	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
3	esv1828190	chr7:101966669-102439077	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
4	nsv1025363	chr7:102072448-102471485	Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
5	nsv1031471	chr7:102238120-102429404	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	15 gene(s)	inside rSNPs	diseases
6	nsv469620	chr7:102296392-102454063	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	nsv482714	chr7:102296392-102454063	Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
8	nsv868996	chr7:102332827-102991361	ZNF genes & repeats Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
9	esv2761100	chr7:102335787-102481978	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
10	esv2752138	chr7:102358320-102787135	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
11	nsv470382	chr7:102375663-102538515	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
12	nsv970564	chr7:102397635-102440049	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:102390000-102434400	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr7:102390200-102432000	Weak transcription	Left Ventricle	heart
3	chr7:102390600-102422600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr7:102390800-102448800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr7:102391000-102424800	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr7:102391000-102435400	Weak transcription	Primary T helper cells fromperipheralblood	blood
7	chr7:102391600-102448600	Weak transcription	Adipose Nuclei	Adipose
8	chr7:102401600-102424000	Weak transcription	Primary T cells from cord blood	blood
9	chr7:102404400-102432000	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr7:102406000-102428600	Weak transcription	Stomach Smooth Muscle	stomach
11	chr7:102410600-102430800	Weak transcription	HepG2	liver
12	chr7:102416400-102467600	Weak transcription	Brain Anterior Caudate	brain
13	chr7:102417000-102428400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr7:102417800-102431800	Weak transcription	A549	lung
15	chr7:102418800-102421800	Weak transcription	HUVEC	blood vessel
16	chr7:102418800-102430600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
17	chr7:102419600-102423000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr7:102419600-102454200	Weak transcription	Osteobl	bone
19	chr7:102419600-102456000	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr7:102419800-102422200	Weak transcription	NHEK	skin
21	chr7:102419800-102430200	Weak transcription	Brain Cingulate Gyrus	brain
22	chr7:102419800-102454000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr7:102420000-102421600	Strong transcription	Liver	Liver
24	chr7:102420000-102422800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr7:102420200-102421800	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr7:102420200-102422600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr7:102420200-102422600	Weak transcription	Brain Angular Gyrus	brain
28	chr7:102420200-102422600	Weak transcription	Dnd41	blood
29	chr7:102420400-102421600	Strong transcription	Monocytes-CD14+_RO01746	blood
30	chr7:102420400-102422000	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
31	chr7:102420400-102422000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
32	chr7:102420400-102422000	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
33	chr7:102420400-102422200	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr7:102420400-102448600	Weak transcription	K562	blood
35	chr7:102420600-102421800	Strong transcription	Colonic Mucosa	Colon
36	chr7:102420600-102435200	Weak transcription	Muscle Satellite Cultured Cells	--
37	chr7:102420800-102421600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr7:102420800-102421800	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr7:102420800-102422000	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
40	chr7:102420800-102422200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr7:102420800-102449000	Weak transcription	Rectal Mucosa Donor 29	rectum
42	chr7:102421000-102421600	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr7:102421000-102421600	ZNF genes & repeats	Lung	lung
44	chr7:102421000-102421600	Strong transcription	Ovary	ovary
45	chr7:102421000-102421600	Strong transcription	Thymus	Thymus
46	chr7:102421000-102421800	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
47	chr7:102421000-102421800	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr7:102421000-102421800	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr7:102421000-102421800	ZNF genes & repeats	Fetal Muscle Leg	muscle
50	chr7:102421000-102421800	Strong transcription	Rectal Mucosa Donor 31	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links