Variant report

Variant	rs10465699
Chromosome Location	chr1:215301524-215301525
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10158967	0.85[YRI][hapmap]
rs10494990	1.00[CEU][hapmap]
rs11120491	1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11120493	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11120505	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12047560	1.00[CEU][hapmap]
rs12060322	0.93[YRI][hapmap]
rs12064019	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12069967	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs12086417	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12097685	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12131195	1.00[CEU][hapmap]
rs12239750	1.00[AFR][1000 genomes]
rs1339403	0.86[YRI][hapmap]
rs1349672	1.00[CEU][hapmap]
rs1452634	1.00[CEU][hapmap]
rs17024306	1.00[CEU][hapmap];0.98[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17024342	0.83[MKK][hapmap];0.86[YRI][hapmap]
rs55777551	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55804708	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59564038	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60799931	1.00[EUR][1000 genomes]
rs6656675	1.00[CEU][hapmap];1.00[MEX][hapmap]
rs6695704	1.00[CEU][hapmap]
rs74140931	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74140935	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74140936	1.00[EUR][1000 genomes]
rs74140938	1.00[EUR][1000 genomes]
rs74143657	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873169	chr1:215264486-215453286	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:215288800-215306600	Weak transcription	NHLF	lung
2	chr1:215298600-215303200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr1:215300200-215301600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr1:215300200-215303400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr1:215301200-215302000	Genic enhancers	Osteobl	bone
6	chr1:215301400-215303000	Enhancers	NHDF-Ad	bronchial
7	chr1:215301400-215303600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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