Variant report

Variant	rs10466478
Chromosome Location	chr11:47162604-47162605
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:47162453..47166224-chr11:47170564..47174791,5	MCF-7	breast:

Extended variants
information (count: 106 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:106)

rs_ID	r²[population]
rs10501319	0.83[CHB][hapmap]
rs1055447	0.94[JPT][hapmap];0.94[ASN][1000 genomes]
rs1060573	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10769225	0.82[CHB][hapmap]
rs10769226	0.83[CHB][hapmap]
rs10769227	0.83[CHB][hapmap]
rs10769230	0.83[ASN][1000 genomes]
rs10769233	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10769234	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10769239	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10838640	0.83[CHB][hapmap]
rs10838644	0.83[CHB][hapmap]
rs10838646	0.83[CHB][hapmap]
rs10838652	0.83[CHB][hapmap]
rs10838654	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10838658	0.82[CHB][hapmap]
rs10838659	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10838660	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10838662	0.83[CHB][hapmap]
rs10838663	0.83[CHB][hapmap]
rs10838664	0.83[CHB][hapmap]
rs11039035	0.83[CHB][hapmap]
rs11039074	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11039086	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11039097	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11039105	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11039107	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11039112	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11039119	0.95[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11039124	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11039134	0.87[ASN][1000 genomes]
rs11600668	0.95[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11601798	0.85[CHB][hapmap]
rs11602250	0.84[CHB][hapmap]
rs12224096	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12288724	0.86[YRI][hapmap]
rs12291341	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12417519	0.83[CHB][hapmap]
rs12574410	0.86[CHB][hapmap]
rs12796744	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12807887	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17790204	0.82[CHB][hapmap]
rs1872896	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[MKK][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1965952	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1976142	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1976143	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2018527	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2029298	0.95[CEU][hapmap];0.95[CHB][hapmap];0.83[JPT][hapmap];0.80[MKK][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2087215	0.83[CHB][hapmap]
rs2279438	0.83[CHB][hapmap]
rs2279439	0.83[CHB][hapmap]
rs4237547	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4319472	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4528282	0.82[CHB][hapmap]
rs4548577	0.83[CHB][hapmap]
rs4567413	0.95[CEU][hapmap];0.95[CHB][hapmap];0.83[JPT][hapmap];0.80[MKK][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4579897	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4587689	0.83[CHB][hapmap]
rs4752815	0.83[CHB][hapmap]
rs4752816	0.83[CHB][hapmap]
rs4752951	0.82[CHB][hapmap]
rs4752952	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4752957	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4752962	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4752963	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4752965	0.83[CHB][hapmap]
rs4752967	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4752969	0.83[CHB][hapmap]
rs4752971	0.95[CEU][hapmap];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs57323109	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6485715	0.83[CHB][hapmap]
rs6485716	0.86[CHB][hapmap]
rs6485721	0.86[ASN][1000 genomes]
rs6485722	0.85[ASN][1000 genomes]
rs6485726	0.83[CHB][hapmap]
rs6485739	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[MKK][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7103581	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7108902	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7111270	0.83[CHB][hapmap]
rs7111764	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7112854	0.82[CHB][hapmap]
rs7118546	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7119952	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7121418	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[MKK][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7124648	0.83[CHB][hapmap]
rs7125807	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs7126005	0.83[CHB][hapmap]
rs7128325	0.86[ASN][1000 genomes]
rs7128650	0.83[CHB][hapmap]
rs7130006	0.83[CHB][hapmap]
rs7130947	0.83[CHB][hapmap]
rs747650	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7479189	1.00[CEU][hapmap];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7931260	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7937101	0.95[CEU][hapmap];0.95[CHB][hapmap];0.84[JPT][hapmap];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7937410	0.83[CHB][hapmap]
rs7937950	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7938169	0.83[CHB][hapmap]
rs7940240	0.83[CHB][hapmap]
rs7942473	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7945315	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7946709	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7947878	0.82[ASN][1000 genomes]
rs7950753	0.83[CHB][hapmap]
rs923324	0.82[CHB][hapmap]
rs9633886	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]

No data

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:47141000-47164600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:47143600-47164600	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr11:47143600-47175200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr11:47145200-47164800	Weak transcription	Ovary	ovary
5	chr11:47145200-47174800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr11:47147600-47164200	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr11:47148200-47164400	Weak transcription	NHEK	skin
8	chr11:47149000-47170400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr11:47149400-47173200	Weak transcription	Primary B cells from peripheral blood	blood
10	chr11:47149600-47170400	Weak transcription	Esophagus	oesophagus
11	chr11:47149800-47164200	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr11:47151200-47170600	Weak transcription	Gastric	stomach
13	chr11:47152800-47164600	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr11:47153000-47164400	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr11:47153000-47164400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr11:47153000-47164400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr11:47153000-47164400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr11:47153000-47174400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr11:47153400-47174800	Weak transcription	Primary hematopoietic stem cells	blood
20	chr11:47155400-47164000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr11:47155400-47164600	Weak transcription	Pancreas	Pancrea
22	chr11:47155400-47170200	Weak transcription	Stomach Mucosa	stomach
23	chr11:47155600-47170200	Weak transcription	Small Intestine	intestine
24	chr11:47155600-47174400	Weak transcription	Fetal Brain Male	brain
25	chr11:47157200-47164200	Weak transcription	Placenta	Placenta
26	chr11:47157200-47164400	Weak transcription	Rectal Smooth Muscle	rectum
27	chr11:47157400-47164000	Weak transcription	Fetal Kidney	kidney
28	chr11:47157600-47164400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr11:47157600-47170400	Weak transcription	Colonic Mucosa	Colon
30	chr11:47157800-47169800	Weak transcription	Brain Germinal Matrix	brain
31	chr11:47158000-47164400	Weak transcription	Muscle Satellite Cultured Cells	--
32	chr11:47158000-47174800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
33	chr11:47158600-47164000	Weak transcription	HSMMtube	muscle
34	chr11:47158800-47165200	Weak transcription	Osteobl	bone
35	chr11:47158800-47175000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr11:47159000-47162800	Strong transcription	Hela-S3	cervix
37	chr11:47159200-47164400	Weak transcription	NH-A	brain
38	chr11:47159400-47171200	Weak transcription	Rectal Mucosa Donor 29	rectum
39	chr11:47159600-47164200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr11:47159600-47174000	Weak transcription	Primary T helper cells PMA-I stimulated	--
41	chr11:47159800-47164400	Weak transcription	HSMM	muscle
42	chr11:47159800-47174200	Weak transcription	Primary B cells from cord blood	blood
43	chr11:47160000-47164000	Weak transcription	NHDF-Ad	bronchial
44	chr11:47160000-47164400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr11:47160000-47164800	Weak transcription	Left Ventricle	heart
46	chr11:47160000-47165600	Weak transcription	Primary T helper cells fromperipheralblood	blood
47	chr11:47160000-47169200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr11:47160000-47169200	Weak transcription	Cortex derived primary cultured neurospheres	brain
49	chr11:47160000-47169600	Weak transcription	Lung	lung
50	chr11:47160000-47170400	Weak transcription	Adipose Nuclei	Adipose

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