Variant report

Variant	rs10469284
Chromosome Location	chr19:42997564-42997565
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10084159	0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10401271	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10402677	0.82[EUR][1000 genomes]
rs10403517	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10405445	0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10405906	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10412463	0.85[EUR][1000 genomes]
rs10413413	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10416089	0.92[EUR][1000 genomes]
rs10422987	0.85[EUR][1000 genomes]
rs10469285	0.87[CEU][hapmap];0.82[YRI][hapmap];0.86[AMR][1000 genomes]
rs11665870	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11665935	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11666350	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11668460	0.85[AMR][1000 genomes]
rs11668599	0.87[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11670316	0.83[AMR][1000 genomes]
rs11671272	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11671846	0.87[CEU][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11673645	0.87[CEU][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11879306	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11881517	0.85[EUR][1000 genomes]
rs11882150	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12611218	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13343936	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16975789	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16975865	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16975890	0.87[CEU][hapmap];0.89[YRI][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs28411988	0.85[EUR][1000 genomes]
rs4080606	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55850134	0.93[EUR][1000 genomes]
rs60313903	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7253056	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8102439	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8102519	0.82[EUR][1000 genomes]
rs8103285	0.82[EUR][1000 genomes]
rs8103891	0.85[EUR][1000 genomes]
rs8106570	0.82[EUR][1000 genomes]
rs8107152	0.82[EUR][1000 genomes]
rs8107254	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8107790	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8112156	0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs851298	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs851301	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs851302	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526186	chr19:42676481-43203507	Enhancers Bivalent Enhancer Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	62 gene(s)	inside rSNPs	diseases
2	esv2422471	chr19:42733141-43669485	Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	70 gene(s)	inside rSNPs	diseases
3	esv2422468	chr19:42991289-43669027	Enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:42981200-43002000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr19:42986000-42999400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr19:42986600-42998200	Weak transcription	Liver	Liver
4	chr19:42991000-43001000	Weak transcription	Adipose Nuclei	Adipose
5	chr19:42993000-43001400	Enhancers	HepG2	liver
6	chr19:42993600-43000800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr19:42993800-42998600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr19:42993800-42999200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr19:42993800-43000800	Weak transcription	A549	lung
10	chr19:42996400-42997600	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr19:42997000-43003800	Enhancers	Fetal Intestine Small	intestine
12	chr19:42997400-42997800	Enhancers	Fetal Intestine Large	intestine

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