Variant report

Variant	rs10470064
Chromosome Location	chr20:24193523-24193524
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs28719682	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	esv3328348	chr20:24095746-24285830	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv833945	chr20:24163437-24349462	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24190400-24196000	Enhancers	Fetal Intestine Large	intestine
2	chr20:24191800-24194200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr20:24192000-24195600	Enhancers	Fetal Intestine Small	intestine
4	chr20:24192200-24193600	Enhancers	Placenta Amnion	Placenta Amnion
5	chr20:24192200-24193800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr20:24192200-24193800	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr20:24192200-24194000	Enhancers	H1 Cell Line	embryonic stem cell
8	chr20:24192200-24194000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr20:24192200-24194000	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr20:24192400-24194000	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr20:24192600-24194000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr20:24192600-24194000	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr20:24192600-24194200	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr20:24192800-24193600	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
15	chr20:24193000-24193800	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
16	chr20:24193200-24193600	Flanking Bivalent TSS/Enh	Primary T cells from cord blood	blood
17	chr20:24193200-24193600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
18	chr20:24193200-24193600	Bivalent Enhancer	Fetal Thymus	thymus
19	chr20:24193200-24193600	Bivalent Enhancer	Thymus	Thymus
20	chr20:24193200-24193800	Flanking Active TSS	Primary hematopoietic stem cells	blood
21	chr20:24193200-24196800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr20:24193400-24193800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links