Variant report

Variant	rs10475073
Chromosome Location	chr5:16158240-16158241
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10051368	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10051545	1.00[ASN][1000 genomes]
rs10059842	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10059919	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10068941	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10070121	0.87[AFR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10074672	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13354280	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13354758	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1446032	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1446036	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1561637	1.00[ASN][1000 genomes]
rs2121182	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3933641	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7726990	1.00[ASN][1000 genomes]
rs9312903	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9312905	1.00[JPT][hapmap];0.84[YRI][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9312906	1.00[ASN][1000 genomes]
rs9312907	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830217	chr5:16004704-16225229	Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv1838286	chr5:16150721-16180167	ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Weak transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	esv1848638	chr5:16150721-16180167	Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:16157600-16158600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr5:16157600-16158600	Active TSS	Fetal Heart	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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