Variant report

Variant	rs10477289
Chromosome Location	chr5:145206577-145206578
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:145081237..145084236-chr5:145205534..145207080,2	K562	blood:
2	chr5:145204103..145206946-chr5:145223103..145224870,2	MCF-7	breast:
3	chr5:145206512..145209895-chr5:145210961..145215368,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000186314	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10051351	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10065896	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10077055	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10077064	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10477287	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10477288	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10515561	1.00[CHB][hapmap];0.90[ASN][1000 genomes]
rs13436556	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17103751	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1897546	0.90[ASN][1000 genomes]
rs28851615	1.00[ASN][1000 genomes]
rs338898	1.00[CHB][hapmap];0.90[ASN][1000 genomes]
rs338900	1.00[CHB][hapmap]
rs58231022	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59985240	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60397743	1.00[ASN][1000 genomes]
rs61130363	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6876949	0.95[ASN][1000 genomes]
rs6895551	0.83[ASN][1000 genomes]
rs6896572	0.95[ASN][1000 genomes]
rs6896600	0.95[ASN][1000 genomes]
rs73306047	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73306050	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73306051	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73306058	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73306061	0.95[ASN][1000 genomes]
rs7725012	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9324994	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9324995	1.00[ASN][1000 genomes]
rs9324998	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:145158400-145207000	Weak transcription	Esophagus	oesophagus
2	chr5:145162800-145212800	Weak transcription	Rectal Smooth Muscle	rectum
3	chr5:145170600-145213400	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr5:145172800-145214200	Weak transcription	Right Ventricle	heart
5	chr5:145174200-145209200	Weak transcription	Colon Smooth Muscle	Colon
6	chr5:145177200-145206800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr5:145177200-145209000	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr5:145177200-145209200	Weak transcription	NH-A	brain
9	chr5:145177400-145209000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr5:145179200-145207000	Weak transcription	Pancreas	Pancrea
11	chr5:145179400-145209400	Weak transcription	Stomach Mucosa	stomach
12	chr5:145182800-145207000	Weak transcription	Small Intestine	intestine
13	chr5:145183600-145214000	Weak transcription	Fetal Kidney	kidney
14	chr5:145187000-145209200	Weak transcription	A549	lung
15	chr5:145192800-145209200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr5:145194800-145209000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr5:145195200-145212800	Weak transcription	Colonic Mucosa	Colon
18	chr5:145196200-145211800	Weak transcription	Gastric	stomach
19	chr5:145196800-145214000	Weak transcription	Fetal Stomach	stomach
20	chr5:145197800-145206600	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr5:145197800-145206600	Weak transcription	HMEC	breast
22	chr5:145197800-145206800	Weak transcription	HepG2	liver
23	chr5:145197800-145209200	Weak transcription	Primary hematopoietic stem cells	blood
24	chr5:145198000-145206600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr5:145198000-145213600	Weak transcription	Stomach Smooth Muscle	stomach
26	chr5:145198200-145210200	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr5:145198600-145206600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr5:145198800-145209000	Weak transcription	Ovary	ovary
29	chr5:145198800-145212000	Weak transcription	Aorta	Aorta
30	chr5:145201400-145209400	Weak transcription	Rectal Mucosa Donor 29	rectum
31	chr5:145201400-145214200	Weak transcription	Lung	lung
32	chr5:145201800-145206600	Weak transcription	Fetal Intestine Large	intestine
33	chr5:145201800-145210400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
34	chr5:145202000-145209000	Weak transcription	HUVEC	blood vessel
35	chr5:145204000-145208800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr5:145204000-145209200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
37	chr5:145204000-145209600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr5:145204200-145207000	Weak transcription	Fetal Brain Male	brain
39	chr5:145204200-145209000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr5:145204200-145209000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr5:145204200-145209200	Weak transcription	Fetal Lung	lung
42	chr5:145204200-145209600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr5:145205400-145209400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr5:145205800-145206600	Weak transcription	Fetal Intestine Small	intestine
45	chr5:145206000-145209000	Weak transcription	Rectal Mucosa Donor 31	rectum
46	chr5:145206400-145206800	Enhancers	K562	blood
47	chr5:145206400-145207000	Enhancers	Fetal Heart	heart
48	chr5:145206400-145207400	Enhancers	Liver	Liver
49	chr5:145206400-145207400	Enhancers	Duodenum Mucosa	Duodenum

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