Variant report

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10040337	0.91[EUR][1000 genomes]
rs10042197	0.89[EUR][1000 genomes]
rs10070521	0.88[EUR][1000 genomes]
rs10073120	0.89[EUR][1000 genomes]
rs10073125	0.90[EUR][1000 genomes]
rs10477560	0.81[EUR][1000 genomes]
rs10478340	0.81[EUR][1000 genomes]
rs10478342	0.82[EUR][1000 genomes]
rs13170929	0.82[EUR][1000 genomes]
rs13171356	0.89[EUR][1000 genomes]
rs13182834	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1494827	0.81[EUR][1000 genomes]
rs1494828	0.81[EUR][1000 genomes]
rs1845562	0.81[EUR][1000 genomes]
rs1908407	0.85[EUR][1000 genomes]
rs2132050	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2220859	0.81[EUR][1000 genomes]
rs2416466	0.81[EUR][1000 genomes]
rs34479127	0.87[EUR][1000 genomes]
rs34498712	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4580811	0.91[CEU][hapmap];0.81[EUR][1000 genomes]
rs6595018	0.93[ASN][1000 genomes]
rs6595019	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs66726800	0.89[EUR][1000 genomes]
rs6874362	0.89[EUR][1000 genomes]
rs6875387	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7447805	0.89[EUR][1000 genomes]
rs7703141	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7708893	0.82[EUR][1000 genomes]
rs7710998	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7714567	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7716765	0.85[EUR][1000 genomes]
rs7732638	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7735582	0.89[EUR][1000 genomes]
rs7737236	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882752	chr5:116505127-116549323	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
2	nsv882753	chr5:116505127-116549669	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
3	nsv882754	chr5:116505127-116553503	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
4	nsv1015741	chr5:116525936-116665270	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:116541800-116550600	Weak transcription	Stomach Mucosa	stomach
2	chr5:116543000-116559000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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