Variant report

Variant	rs1047894
Chromosome Location	chr4:119981828-119981829
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:119979901..119982507-chr4:120003877..120006669,2	MCF-7	breast:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10002998	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs10017724	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10020899	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10021107	1.00[CEU][hapmap];0.94[CHD][hapmap];0.95[GIH][hapmap];0.84[JPT][hapmap];0.85[TSI][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10518309	0.82[JPT][hapmap]
rs1058449	0.92[CEU][hapmap];0.90[EUR][1000 genomes]
rs1058451	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1459063	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17050104	0.90[JPT][hapmap]
rs17050108	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs17050116	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17050123	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17050125	0.88[ASW][hapmap];0.91[LWK][hapmap]
rs17050127	0.85[ASN][1000 genomes]
rs17265233	0.84[CEU][hapmap]
rs17330453	0.92[CEU][hapmap]
rs28411116	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28495816	0.88[EUR][1000 genomes]
rs28609814	0.92[EUR][1000 genomes]
rs28698789	0.92[EUR][1000 genomes]
rs28744401	0.91[EUR][1000 genomes]
rs3756153	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4834738	0.88[ASW][hapmap];0.88[LWK][hapmap]
rs60158411	0.85[ASN][1000 genomes]
rs60779416	0.85[ASN][1000 genomes]
rs62328679	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62328680	0.99[EUR][1000 genomes]
rs62328681	0.99[EUR][1000 genomes]
rs62328710	0.90[EUR][1000 genomes]
rs62328715	0.80[EUR][1000 genomes]
rs62328716	0.89[EUR][1000 genomes]
rs62328720	0.92[EUR][1000 genomes]
rs6837925	0.82[CHD][hapmap];0.82[JPT][hapmap]
rs6848910	0.85[ASN][1000 genomes]
rs9992697	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9998313	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[CHD][hapmap];0.95[GIH][hapmap];0.92[JPT][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916641	chr4:119780023-120777320	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	nsv948802	chr4:119844269-120208926	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:119967400-119994000	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr4:119971000-119989600	Weak transcription	Colon Smooth Muscle	Colon
3	chr4:119975800-119994000	Weak transcription	Right Ventricle	heart
4	chr4:119975800-120003000	Weak transcription	Left Ventricle	heart
5	chr4:119979200-119996400	Weak transcription	Aorta	Aorta
6	chr4:119979400-119989800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr4:119980600-119994000	Weak transcription	Stomach Smooth Muscle	stomach

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