Variant report

Variant	rs10479227
Chromosome Location	chr5:98015723-98015724
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10041609	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10062576	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10063587	0.88[AFR][1000 genomes]
rs10069926	0.80[AFR][1000 genomes]
rs10077523	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10479228	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10479229	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10479244	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13357377	0.88[AFR][1000 genomes]
rs17166367	1.00[MEX][hapmap]
rs17166368	1.00[MEX][hapmap]
rs28872549	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55827362	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57794132	0.88[AFR][1000 genomes]
rs58603373	0.88[AFR][1000 genomes]
rs60606949	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6895731	1.00[MEX][hapmap]
rs73149523	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73149536	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73149563	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73149569	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73149585	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9327876	0.88[AFR][1000 genomes]
rs9632473	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016611	chr5:97873846-98035559	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv537816	chr5:97873846-98035559	Enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv1029509	chr5:97888644-98040172	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv882413	chr5:97918829-98022320	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv980702	chr5:98015320-98017447	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:98015000-98016200	Enhancers	Dnd41	blood
2	chr5:98015200-98015800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr5:98015200-98016400	Enhancers	Muscle Satellite Cultured Cells	--
4	chr5:98015200-98016600	Enhancers	HSMM	muscle
5	chr5:98015400-98016400	Enhancers	NH-A	brain
6	chr5:98015600-98017000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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