Variant report

Variant	rs10483838
Chromosome Location	chr14:72468497-72468498
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:72398907..72399468-chr14:72468492..72469071,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000182732	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10131317	0.89[ASN][1000 genomes]
rs17104979	1.00[CEU][hapmap]
rs17105025	1.00[CEU][hapmap];0.81[JPT][hapmap]
rs17105032	1.00[CEU][hapmap];0.81[JPT][hapmap];0.85[MEX][hapmap]
rs17105061	1.00[CEU][hapmap];0.81[JPT][hapmap];0.85[MEX][hapmap]
rs1860105	1.00[CEU][hapmap];0.81[JPT][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap];0.97[EUR][1000 genomes]
rs2052014	0.85[CHD][hapmap];0.93[JPT][hapmap]
rs2190872	0.81[JPT][hapmap]
rs2238266	0.93[JPT][hapmap]
rs2238274	0.81[JPT][hapmap];0.97[EUR][1000 genomes]
rs2238275	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes]
rs2238276	1.00[CEU][hapmap];0.81[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.97[EUR][1000 genomes]
rs2238283	1.00[CEU][hapmap]
rs2238285	1.00[CEU][hapmap]
rs2239266	0.89[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.89[ASN][1000 genomes]
rs2239270	1.00[CEU][hapmap]
rs2332706	0.86[CHB][hapmap];0.96[CHD][hapmap];0.93[JPT][hapmap];0.90[ASN][1000 genomes]
rs28450218	0.89[ASN][1000 genomes]
rs28644384	0.89[ASN][1000 genomes]
rs28718774	0.88[ASN][1000 genomes]
rs3784054	0.89[ASW][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs41389946	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap]
rs41488847	1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap]
rs4899413	0.85[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs4902960	1.00[CEU][hapmap];0.81[JPT][hapmap];0.85[MEX][hapmap]
rs4902965	1.00[CEU][hapmap];0.81[JPT][hapmap];0.97[EUR][1000 genomes]
rs4902972	0.86[CHB][hapmap];0.96[CHD][hapmap];0.93[JPT][hapmap];0.89[ASN][1000 genomes]
rs58002698	0.97[EUR][1000 genomes]
rs58870443	0.80[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs59707038	0.87[ASN][1000 genomes]
rs60545259	0.97[EUR][1000 genomes]
rs720391	0.92[EUR][1000 genomes]
rs73293287	0.91[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs764624	1.00[CEU][hapmap];0.81[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.97[EUR][1000 genomes]
rs8017221	0.83[CHB][hapmap];0.91[JPT][hapmap]
rs8017799	0.83[CHB][hapmap];0.93[JPT][hapmap]
rs966815	0.85[CHB][hapmap];0.92[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530794	chr14:72113818-73034008	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
2	nsv948800	chr14:72462557-73150701	Enhancers Bivalent Enhancer Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:72467000-72471000	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr14:72468000-72469200	Enhancers	GM12878-XiMat	blood
3	chr14:72468000-72470200	Enhancers	Fetal Brain Male	brain
4	chr14:72468000-72470400	Weak transcription	Fetal Muscle Leg	muscle
5	chr14:72468000-72470400	Weak transcription	Left Ventricle	heart

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