Variant report

Variant	rs10484669
Chromosome Location	chr6:133692366-133692367
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1336520	0.87[CEU][hapmap]
rs1886983	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1998836	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2095602	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2095603	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2223435	1.00[CEU][hapmap]
rs34751763	0.81[ASN][1000 genomes]
rs3777804	1.00[CEU][hapmap];0.85[TSI][hapmap]
rs62428663	1.00[AFR][1000 genomes]
rs62428668	0.82[ASN][1000 genomes]
rs62428724	0.82[ASN][1000 genomes]
rs62428725	0.84[ASN][1000 genomes]
rs62428726	0.84[ASN][1000 genomes]
rs714178	1.00[CEU][hapmap];0.92[JPT][hapmap];0.90[AMR][1000 genomes]
rs73559612	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73559615	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs742300	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7760570	0.93[CEU][hapmap]
rs9373043	0.81[CEU][hapmap]
rs9375955	1.00[ASW][hapmap]
rs9402494	1.00[ASW][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3451050	chr6:133692259-133695857	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133684600-133717800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr6:133690800-133693200	Active TSS	Hela-S3	cervix
3	chr6:133691400-133692400	Weak transcription	A549	lung
4	chr6:133691400-133698000	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr6:133691400-133700200	Weak transcription	Psoas Muscle	Psoas
6	chr6:133691400-133700800	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr6:133691600-133701200	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr6:133692000-133692400	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr6:133692200-133692400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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