Variant report

Variant	rs10487146
Chromosome Location	chr7:104604608-104604609
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:104592416..104594450-chr7:104601446..104605080,3	K562	blood:
2	chr7:104598070..104600552-chr7:104603554..104605680,2	MCF-7	breast:
3	chr7:104596381..104598506-chr7:104603345..104606110,2	K562	blood:
4	chr7:104595365..104601201-chr7:104602410..104607281,8	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10215748	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11972126	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12333819	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17721388	0.81[CHB][hapmap];0.81[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];0.85[TSI][hapmap];0.81[YRI][hapmap]
rs3815256	0.81[YRI][hapmap]
rs4730061	0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs55818299	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs57657113	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs740068	0.83[MKK][hapmap];0.81[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029283	chr7:104571741-104729168	Strong transcription Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	132 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:104584600-104619000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:104587200-104623600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr7:104595600-104605600	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr7:104597200-104608200	Weak transcription	Primary T helper cells fromperipheralblood	blood
5	chr7:104597800-104606200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr7:104598000-104619800	Weak transcription	Primary T cells from cord blood	blood
7	chr7:104598000-104621600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr7:104598200-104611600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr7:104598200-104620800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr7:104598200-104621400	Weak transcription	Primary T helper cells PMA-I stimulated	--
11	chr7:104598200-104623000	Weak transcription	Primary T cells fromperipheralblood	blood
12	chr7:104598400-104607600	Weak transcription	HSMM	muscle
13	chr7:104599000-104617200	Weak transcription	Gastric	stomach
14	chr7:104601000-104605400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr7:104601000-104605400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr7:104601200-104604800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr7:104601200-104605400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr7:104601200-104605400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr7:104601200-104605400	Enhancers	HMEC	breast
20	chr7:104601400-104604800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr7:104601400-104605400	Enhancers	HUVEC	blood vessel
22	chr7:104601400-104605600	Enhancers	Stomach Smooth Muscle	stomach
23	chr7:104601400-104605800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr7:104601800-104622800	Weak transcription	Thymus	Thymus
25	chr7:104602200-104604800	Enhancers	Right Atrium	heart
26	chr7:104602400-104605400	Enhancers	Primary neutrophils fromperipheralblood	blood
27	chr7:104602600-104605600	Enhancers	Colon Smooth Muscle	Colon
28	chr7:104602600-104605600	Enhancers	Osteobl	bone
29	chr7:104602600-104614400	Weak transcription	Placenta	Placenta
30	chr7:104602800-104606600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
31	chr7:104602800-104608600	Enhancers	K562	blood
32	chr7:104603000-104604800	Enhancers	NH-A	brain
33	chr7:104603000-104605000	Enhancers	A549	lung
34	chr7:104603000-104605200	Enhancers	Duodenum Smooth Muscle	Duodenum
35	chr7:104603000-104605600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
36	chr7:104603000-104605600	Enhancers	Muscle Satellite Cultured Cells	--
37	chr7:104603000-104608400	Strong transcription	Primary B cells from peripheral blood	blood
38	chr7:104603200-104605000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr7:104603200-104605000	Enhancers	NHEK	skin
40	chr7:104603200-104605600	Enhancers	Fetal Stomach	stomach
41	chr7:104603200-104612200	Weak transcription	Colonic Mucosa	Colon
42	chr7:104603400-104604800	Enhancers	Skeletal Muscle Female	skeletal muscle
43	chr7:104603400-104607600	Weak transcription	Small Intestine	intestine
44	chr7:104603600-104604800	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
45	chr7:104603800-104604800	Enhancers	Rectal Mucosa Donor 31	rectum
46	chr7:104603800-104605200	Enhancers	NHLF	lung
47	chr7:104603800-104605400	Enhancers	HepG2	liver
48	chr7:104603800-104605600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr7:104604000-104604800	Enhancers	Brain Angular Gyrus	brain
50	chr7:104604000-104604800	Enhancers	Sigmoid Colon	Sigmoid Colon

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