Variant report

Variant	rs10487452
Chromosome Location	chr7:126202503-126202504
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:126181175..126183818-chr7:126200228..126202608,2	K562	blood:
2	chr7:126198359..126200482-chr7:126202205..126203879,2	K562	blood:

Extended variants
information (count: 53 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs1008906	0.91[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.86[TSI][hapmap]
rs10246061	0.97[EUR][1000 genomes]
rs10253770	1.00[CEU][hapmap];0.83[CHB][hapmap]
rs10274867	1.00[CEU][hapmap];0.83[CHB][hapmap];0.87[GIH][hapmap];0.91[TSI][hapmap];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10275004	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs10275020	0.81[CHB][hapmap];0.85[JPT][hapmap]
rs11763805	0.99[EUR][1000 genomes]
rs11764888	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs11765247	0.88[CEU][hapmap];0.91[CHB][hapmap];0.85[JPT][hapmap]
rs11765912	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs11767915	0.88[CEU][hapmap];0.91[CHB][hapmap];0.85[JPT][hapmap]
rs11767976	1.00[ASW][hapmap];0.88[CEU][hapmap];0.91[CHB][hapmap];0.92[CHD][hapmap];0.85[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap]
rs11769015	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11770188	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11773107	0.82[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap]
rs1345211	0.81[CHB][hapmap];0.83[CHD][hapmap];0.85[JPT][hapmap];0.86[TSI][hapmap]
rs1361982	0.94[CEU][hapmap];0.91[CHB][hapmap];0.85[JPT][hapmap]
rs1468157	0.91[CHB][hapmap];0.88[CHD][hapmap];0.85[JPT][hapmap];0.86[TSI][hapmap]
rs17149953	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17149975	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17149978	1.00[CEU][hapmap];0.83[CHB][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17150011	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17150014	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17610771	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17612316	0.88[CEU][hapmap];0.91[CHB][hapmap];0.92[CHD][hapmap];0.82[GIH][hapmap];0.85[JPT][hapmap];1.00[TSI][hapmap]
rs2157821	0.88[CEU][hapmap];0.91[CHB][hapmap];0.91[CHD][hapmap];1.00[TSI][hapmap]
rs2237744	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2299495	0.91[CHB][hapmap];0.88[CHD][hapmap];0.85[JPT][hapmap];0.86[TSI][hapmap]
rs41463444	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4731326	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs56142844	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56256561	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs57391111	0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs58699988	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs60714151	0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs62477862	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62477869	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62477942	0.80[ASN][1000 genomes]
rs62477944	0.80[ASN][1000 genomes]
rs62479322	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6953879	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs73224961	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73224962	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73224963	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7805288	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs7805959	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs9690442	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529300	chr7:125669493-126587858	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1028204	chr7:125897362-126225444	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv539118	chr7:125897362-126225444	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv1032938	chr7:126067684-126587859	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv539119	chr7:126067684-126587859	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv521803	chr7:126149319-126219766	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10487452	DAPK1	trans	lymphoblastoid	seeQTL

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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