Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:126365451..126368313-chr7:126375080..126378772,3	K562	blood:

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1008907	0.81[CHB][hapmap]
rs10216158	0.95[CHB][hapmap];0.87[JPT][hapmap]
rs10232001	0.85[CHB][hapmap];0.89[CHD][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs10256873	0.84[CHB][hapmap]
rs10279350	0.90[CHB][hapmap];0.91[CHD][hapmap];0.87[JPT][hapmap]
rs10280247	0.85[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs11978951	0.85[CHB][hapmap]
rs12706744	0.81[CHB][hapmap]
rs1362001	0.90[CHB][hapmap];0.87[JPT][hapmap]
rs1419493	0.81[CHB][hapmap]
rs1946116	0.95[CHB][hapmap];0.95[CHD][hapmap];0.87[JPT][hapmap]
rs2237767	0.85[CHB][hapmap]
rs2299499	0.83[ASN][1000 genomes]
rs2299500	0.85[CHB][hapmap]
rs2299513	0.94[CHB][hapmap];0.90[JPT][hapmap]
rs2299514	0.90[CHB][hapmap];0.91[CHD][hapmap];0.87[JPT][hapmap]
rs4728050	0.85[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs6467095	0.85[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs6467096	0.85[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs6467097	0.83[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs6969693	0.81[CHB][hapmap]
rs6974018	0.85[CHB][hapmap]
rs6976797	0.84[CHB][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs756900	0.81[CHB][hapmap]
rs7784073	0.80[CHD][hapmap]
rs7791956	0.80[ASN][1000 genomes]
rs7794592	0.85[ASN][1000 genomes]
rs7801141	0.89[CHB][hapmap];0.86[JPT][hapmap]
rs7804521	0.85[CHB][hapmap]
rs886176	0.81[CHB][hapmap]
rs9969183	0.95[CHB][hapmap];0.95[CHD][hapmap];0.87[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529300	chr7:125669493-126587858	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1032938	chr7:126067684-126587859	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv539119	chr7:126067684-126587859	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv889187	chr7:126219766-126478190	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10487458	MEST	cis	cerebellum	SCAN
rs10487458	RBM28	cis	parietal	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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