Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10952715	0.84[JPT][hapmap]
rs17234278	0.86[CEU][hapmap];0.89[JPT][hapmap]
rs17236239	0.83[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs17236877	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17827310	0.85[ASN][1000 genomes]
rs2538966	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs2538967	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2538968	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2538970	0.80[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap]
rs2708267	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4397315	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4431524	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4725752	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs56073287	0.99[ASN][1000 genomes]
rs56265348	0.90[ASN][1000 genomes]
rs56335186	0.97[ASN][1000 genomes]
rs57536589	0.86[ASN][1000 genomes]
rs62474777	0.99[ASN][1000 genomes]
rs62481197	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62481219	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6972811	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs73166262	0.85[ASN][1000 genomes]
rs851708	0.86[CEU][hapmap];0.89[JPT][hapmap]
rs9655720	0.81[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023913	chr7:147521075-147806318	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1026058	chr7:147521109-147783042	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv539179	chr7:147521109-147783042	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv934002	chr7:147521110-147807705	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1017610	chr7:147523752-147806427	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:147601200-147609400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr7:147606400-147607800	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr7:147606400-147608600	Enhancers	Fetal Muscle Leg	muscle
4	chr7:147606600-147608600	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr7:147606600-147610200	Enhancers	Adipose Nuclei	Adipose
6	chr7:147607000-147609200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr7:147607000-147612400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr7:147607200-147608200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr7:147607200-147608600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr7:147607200-147612200	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr7:147607200-147612600	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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