Variant report
| Variant | rs10488353 |
|---|---|
| Chromosome Location | chr7:147520604-147520605 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs10085572 | 1.00[CEU][hapmap] |
| rs10252313 | 1.00[CEU][hapmap];0.90[EUR][1000 genomes] |
| rs10254338 | 1.00[CEU][hapmap] |
| rs10259955 | 1.00[CEU][hapmap] |
| rs10264316 | 1.00[CEU][hapmap];1.00[EUR][1000 genomes] |
| rs10274088 | 1.00[EUR][1000 genomes] |
| rs10278677 | 1.00[CEU][hapmap];1.00[EUR][1000 genomes] |
| rs1035083 | 1.00[EUR][1000 genomes] |
| rs1525256 | 1.00[CEU][hapmap] |
| rs1525258 | 1.00[CEU][hapmap] |
| rs16883720 | 1.00[CEU][hapmap];1.00[YRI][hapmap] |
| rs17170691 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap] |
| rs17170714 | 1.00[CEU][hapmap];1.00[YRI][hapmap];0.90[EUR][1000 genomes] |
| rs17170725 | 1.00[EUR][1000 genomes] |
| rs17170738 | 1.00[EUR][1000 genomes] |
| rs17170743 | 1.00[CEU][hapmap];1.00[EUR][1000 genomes] |
| rs2058506 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs2080155 | 1.00[CEU][hapmap] |
| rs2373272 | 1.00[CEU][hapmap] |
| rs28564993 | 1.00[EUR][1000 genomes] |
| rs4726890 | 1.00[CEU][hapmap] |
| rs6464848 | 1.00[EUR][1000 genomes] |
| rs6977961 | 1.00[CEU][hapmap] |
| rs7782592 | 1.00[EUR][1000 genomes] |
| rs7789789 | 0.91[EUR][1000 genomes] |
| rs992368 | 1.00[YRI][hapmap];1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv933973 | chr7:147438206-147549993 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | n/a |
| 2 | nsv889397 | chr7:147471710-147585819 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | n/a |
| 3 | nsv465193 | chr7:147512619-147583680 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS | TF binding regionChromatin interactive region | 3 gene(s) | inside rSNPs | n/a |
| 4 | nsv608965 | chr7:147512619-147583680 | Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS | TF binding regionChromatin interactive region | 3 gene(s) | inside rSNPs | n/a |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
