Variant report

Variant	rs10488813
Chromosome Location	chr11:35268954-35268955
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:35268801..35270890-chr11:35277985..35280656,2	K562	blood:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10836347	0.86[CEU][hapmap];0.96[EUR][1000 genomes]
rs10836349	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10836352	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10836353	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10836358	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11033031	0.86[CEU][hapmap];0.89[EUR][1000 genomes]
rs11033034	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11033039	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11033041	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11033042	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11033043	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12360706	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12364027	0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12575005	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1570216	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3812778	0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3829280	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4503504	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4508184	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55715534	0.81[EUR][1000 genomes]
rs56193087	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs67384276	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7104662	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7122374	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72638195	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72916162	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045837	chr11:34893992-35395190	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	nsv541004	chr11:35122694-35297414	Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:35258400-35269000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr11:35259200-35270200	Weak transcription	Stomach Mucosa	stomach
3	chr11:35260800-35270200	Weak transcription	Fetal Lung	lung
4	chr11:35262600-35269800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
5	chr11:35262600-35270600	Enhancers	Primary T helper naive cells from peripheral blood	blood
6	chr11:35263000-35270000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
7	chr11:35263000-35270000	Enhancers	Primary T helper cells fromperipheralblood	blood
8	chr11:35263000-35270200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr11:35263000-35270200	Weak transcription	Fetal Brain Male	brain
10	chr11:35263400-35270600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
11	chr11:35263600-35270000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
12	chr11:35264400-35281800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr11:35264800-35270000	Enhancers	Primary T helper cells PMA-I stimulated	--
14	chr11:35264800-35270200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr11:35264800-35281800	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr11:35265400-35270200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr11:35265800-35270200	Weak transcription	Pancreas	Pancrea
18	chr11:35265800-35305800	Weak transcription	HepG2	liver
19	chr11:35266000-35269600	Enhancers	Primary T killer memory cells from peripheral blood	blood
20	chr11:35266600-35269200	Enhancers	Fetal Stomach	stomach
21	chr11:35266800-35269000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr11:35266800-35269800	Enhancers	Primary T cells fromperipheralblood	blood
23	chr11:35266800-35269800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
24	chr11:35267000-35269200	Enhancers	NHDF-Ad	bronchial
25	chr11:35267200-35269400	Enhancers	Rectal Smooth Muscle	rectum
26	chr11:35267400-35269200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr11:35267400-35269200	Enhancers	Skeletal Muscle Female	skeletal muscle
28	chr11:35267400-35269600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
29	chr11:35267600-35269800	Enhancers	Primary T cells from cord blood	blood
30	chr11:35267600-35270200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
31	chr11:35267800-35269400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr11:35267800-35276200	Weak transcription	Right Atrium	heart
33	chr11:35268000-35269000	Weak transcription	Aorta	Aorta
34	chr11:35268000-35269000	Weak transcription	Left Ventricle	heart
35	chr11:35268000-35269200	Enhancers	Colon Smooth Muscle	Colon
36	chr11:35268400-35269200	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
37	chr11:35268400-35269400	Enhancers	Stomach Smooth Muscle	stomach
38	chr11:35268400-35269600	Enhancers	Fetal Heart	heart
39	chr11:35268600-35269000	Weak transcription	Skeletal Muscle Male	skeletal muscle
40	chr11:35268600-35269000	Weak transcription	HSMMtube	muscle
41	chr11:35268600-35274400	Weak transcription	Osteobl	bone
42	chr11:35268800-35270000	Weak transcription	NHLF	lung

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