Variant report

Variant	rs10489384
Chromosome Location	chr1:210573696-210573697
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:17)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:17 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:210544698..210555948-chr1:210566953..210584306,65	MCF-7	breast:
2	chr1:210547388..210548568-chr1:210573512..210574569,14	MCF-7	breast:
3	chr1:210547339..210547980-chr1:210573495..210574254,2	MCF-7	breast:
4	chr1:210566055..210568677-chr1:210572512..210575312,3	MCF-7	breast:
5	chr1:210484126..210484677-chr1:210573695..210574545,2	MCF-7	breast:
6	chr1:210572425..210575594-chr1:210579116..210581300,3	K562	blood:
7	chr1:210573314..210577563-chr1:210578533..210582759,4	K562	blood:
8	chr1:210572567..210575023-chr1:211309974..211312335,2	MCF-7	breast:
9	chr1:210533956..210534790-chr1:210573565..210574523,4	MCF-7	breast:
10	chr1:210547412..210548438-chr1:210573540..210574224,4	K562	blood:
11	chr1:210316574..210317598-chr1:210573631..210575041,4	K562	blood:
12	chr1:210544801..210552702-chr1:210569747..210575327,18	MCF-7	breast:
13	chr1:210565121..210568359-chr1:210572172..210574144,3	K562	blood:
14	chr1:210547837..210548362-chr1:210573678..210574548,3	MCF-7	breast:
15	chr1:210551526..210553574-chr1:210572140..210575060,2	K562	blood:
16	chr1:210546689..210549252-chr1:210570902..210574338,5	K562	blood:
17	chr1:210533311..210536589-chr1:210572457..210575177,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000200972	Chromatin interaction
ENSG00000054392	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs41354049	0.86[ASW][hapmap];0.87[LWK][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57296511	1.00[AMR][1000 genomes]
rs58060889	1.00[AMR][1000 genomes]
rs73071965	1.00[AMR][1000 genomes]
rs73071973	1.00[AMR][1000 genomes]
rs74156149	1.00[AMR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10489384	GMPR	trans	lymphoblastoid	seeQTL

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210529600-210586000	Weak transcription	Pancreas	Pancrea
2	chr1:210551400-210586000	Weak transcription	Primary hematopoietic stem cells	blood
3	chr1:210559000-210584400	Weak transcription	Fetal Stomach	stomach
4	chr1:210566800-210586200	Weak transcription	Lung	lung
5	chr1:210567400-210617200	Weak transcription	Left Ventricle	heart
6	chr1:210568200-210573800	Weak transcription	Aorta	Aorta
7	chr1:210568800-210573800	Weak transcription	Osteobl	bone
8	chr1:210570200-210594000	Weak transcription	Fetal Lung	lung
9	chr1:210570400-210574400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr1:210571200-210573800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr1:210571200-210573800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr1:210571200-210573800	Weak transcription	Right Atrium	heart
13	chr1:210571200-210586200	Weak transcription	Colonic Mucosa	Colon
14	chr1:210571200-210592400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr1:210571400-210573800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr1:210571400-210574200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr1:210571400-210591400	Weak transcription	Ovary	ovary
18	chr1:210571400-210641000	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr1:210571800-210573800	Weak transcription	HSMMtube	muscle
20	chr1:210572600-210574000	Enhancers	Primary T cells fromperipheralblood	blood
21	chr1:210572600-210574000	Enhancers	Primary T helper cells PMA-I stimulated	--
22	chr1:210572600-210574200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
23	chr1:210572800-210573800	Enhancers	NH-A	brain
24	chr1:210572800-210574000	Enhancers	Primary T helper cells fromperipheralblood	blood
25	chr1:210572800-210574000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr1:210572800-210574200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
27	chr1:210573000-210574000	Enhancers	Primary T helper naive cells from peripheral blood	blood
28	chr1:210573000-210574000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
29	chr1:210573200-210573800	Enhancers	Primary T cells from cord blood	blood
30	chr1:210573200-210574000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr1:210573200-210574000	Enhancers	GM12878-XiMat	blood
32	chr1:210573200-210574000	Enhancers	HMEC	breast
33	chr1:210573200-210574200	Enhancers	NHEK	skin
34	chr1:210573200-210574400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr1:210573400-210573800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr1:210573400-210574000	Enhancers	Primary T killer memory cells from peripheral blood	blood
37	chr1:210573400-210574400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr1:210573400-210574400	Enhancers	HSMM	muscle
39	chr1:210573400-210574600	Enhancers	Breast Myoepithelial Primary Cells	Breast
40	chr1:210573600-210574000	Enhancers	HUES6 Cell Line	embryonic stem cell
41	chr1:210573600-210574000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
42	chr1:210573600-210574200	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
43	chr1:210573600-210574200	Enhancers	HepG2	liver
44	chr1:210573600-210574400	Enhancers	Muscle Satellite Cultured Cells	--
45	chr1:210573600-210574400	Enhancers	Right Ventricle	heart
46	chr1:210573600-210592400	Weak transcription	Fetal Intestine Small	intestine

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