Variant report

Variant	rs10490024
Chromosome Location	chr2:210707361-210707362
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10178425	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10178431	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10178675	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[YRI][hapmap];0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10188289	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10194322	0.93[YRI][hapmap];0.84[AFR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10194333	0.86[YRI][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11270377	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12329111	0.80[YRI][hapmap]
rs12386218	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13028068	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13414802	0.82[YRI][hapmap]
rs16843780	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[YRI][hapmap];0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2109970	0.81[YRI][hapmap]
rs2159747	0.81[YRI][hapmap]
rs2191906	1.00[CHB][hapmap];0.83[YRI][hapmap];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6752217	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7581628	0.81[YRI][hapmap]
rs9288414	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431969	chr2:210682494-211074494	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:210682000-210769600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr2:210685800-210708400	Weak transcription	Brain Cingulate Gyrus	brain
3	chr2:210686000-210720400	Weak transcription	Brain Angular Gyrus	brain
4	chr2:210702400-210710000	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr2:210703800-210707800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr2:210705200-210718000	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr2:210705400-210715600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr2:210705600-210720200	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr2:210706000-210709800	Weak transcription	Brain Germinal Matrix	brain
10	chr2:210706000-210715800	Weak transcription	Fetal Brain Female	brain
11	chr2:210706000-210719200	Weak transcription	Brain Anterior Caudate	brain
12	chr2:210707000-210708000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links