Variant report

Variant	rs10490685
Chromosome Location	chr2:182432309-182432310
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs1038034	1.00[CEU][hapmap];0.88[CHB][hapmap];0.92[JPT][hapmap]
rs10490691	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.83[ASN][1000 genomes]
rs11553356	0.83[ASN][1000 genomes]
rs12614187	0.93[CEU][hapmap];0.89[CHB][hapmap];0.83[ASN][1000 genomes]
rs12623687	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12623737	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13387426	0.85[AMR][1000 genomes]
rs1375487	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1449259	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs16867431	1.00[CEU][hapmap];0.92[JPT][hapmap]
rs16867433	1.00[CEU][hapmap];0.83[CHB][hapmap];0.93[JPT][hapmap]
rs16867437	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs16867438	0.83[ASN][1000 genomes]
rs16867442	0.83[ASN][1000 genomes]
rs16867443	0.84[ASN][1000 genomes]
rs16867444	0.85[ASN][1000 genomes]
rs16867445	0.85[ASN][1000 genomes]
rs1816990	0.87[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap]
rs2290517	0.83[ASN][1000 genomes]
rs2305581	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs3770106	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs3770109	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs3770111	1.00[CEU][hapmap];0.94[CHB][hapmap];0.93[JPT][hapmap]
rs3770116	1.00[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap]
rs4479393	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs4666787	0.83[ASN][1000 genomes]
rs4667310	1.00[CEU][hapmap];0.82[CHB][hapmap];0.92[JPT][hapmap]
rs55741565	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55743845	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55913132	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56005177	0.82[ASN][1000 genomes]
rs56073441	0.84[ASN][1000 genomes]
rs56081507	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56104379	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56263562	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56267648	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58018201	0.87[ASN][1000 genomes]
rs58383411	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs58716781	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6707088	1.00[YRI][hapmap]
rs6756022	0.82[ASN][1000 genomes]
rs718449	0.85[ASN][1000 genomes]
rs72883635	0.82[ASN][1000 genomes]
rs72883653	0.83[ASN][1000 genomes]
rs72883655	0.83[ASN][1000 genomes]
rs72883670	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72883678	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72883679	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72883681	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72885326	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72885327	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72885333	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7601843	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs971741	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005870	chr2:181968637-182921439	Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv536063	chr2:181968637-182921439	Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv1014910	chr2:182375267-182544114	Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv536065	chr2:182375267-182544114	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
5	nsv869674	chr2:182409485-182468632	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:182428400-182434800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr2:182431400-182432600	Weak transcription	Brain Germinal Matrix	brain

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