Variant report

Variant	rs10491979
Chromosome Location	chr12:11727970-11727971
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 28 )

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10491981	0.90[EUR][1000 genomes]
rs12296206	1.00[JPT][hapmap]
rs12304175	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12307843	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12318942	1.00[JPT][hapmap]
rs1641623	1.00[JPT][hapmap]
rs16934780	1.00[JPT][hapmap]
rs16935010	1.00[EUR][1000 genomes]
rs16935013	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16935135	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17745379	0.93[EUR][1000 genomes]
rs17745415	0.90[EUR][1000 genomes]
rs17818016	1.00[CEU][hapmap];1.00[CHD][hapmap];0.93[EUR][1000 genomes]
rs17818022	0.93[EUR][1000 genomes]
rs1795551	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57529731	0.93[EUR][1000 genomes]
rs61472986	0.93[EUR][1000 genomes]
rs7302311	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73286605	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73286618	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7954816	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];0.83[TSI][hapmap];0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7972594	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7975032	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7975230	1.00[JPT][hapmap]
rs7975331	1.00[JPT][hapmap]
rs969769	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:28)

SNP	Gene	Cis/trans	Tissue	Source
rs10491979	ZNF831	trans	brain	seeQTL
rs10491979	ASAP2	trans	brain	seeQTL
rs10491979	PKD2	trans	brain	seeQTL
rs10491979	ACPP	trans	lymphoblastoid	seeQTL
rs10491979	MTERFD1	trans	brain	seeQTL
rs10491979	LOC81691	trans	brain	seeQTL
rs10491979	SLC15A4	trans	brain	seeQTL
rs10491979	HOXD11	trans	brain	seeQTL
rs10491979	C14orf135	trans	brain	seeQTL
rs10491979	TMEM165	trans	brain	seeQTL
rs10491979	SYVN1	trans	brain	seeQTL
rs10491979	TAS2R31	cis	brain	seeQTL
rs10491979	RAB3C	trans	brain	seeQTL
rs10491979	DMTF1	trans	brain	seeQTL
rs10491979	GTF3C2	trans	brain	seeQTL
rs10491979	ATP6V1C2	trans	brain	seeQTL
rs10491979	TAS2R19	cis	brain	seeQTL
rs10491979	TMED5	trans	brain	seeQTL
rs10491979	TAS2R43	cis	brain	seeQTL
rs10491979	KLHDC8B	trans	brain	seeQTL
rs10491979	COPB1	trans	brain	seeQTL
rs10491979	KCTD3	trans	brain	seeQTL
rs10491979	TAS2R13	cis	brain	seeQTL
rs10491979	LRP6	cis	brain	seeQTL
rs10491979	TAS2R9	cis	brain	seeQTL
rs10491979	CXCL10	trans	brain	seeQTL
rs10491979	BCL2L14	cis	brain	seeQTL
rs10491979	BMI1	trans	brain	seeQTL

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:11721800-11729000	Weak transcription	Colon Smooth Muscle	Colon
2	chr12:11727800-11729000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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