Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10128001	1.00[CEU][hapmap];1.00[CHD][hapmap];0.86[TSI][hapmap];0.93[AMR][1000 genomes]
rs10518356	1.00[CEU][hapmap];1.00[CHD][hapmap];0.86[TSI][hapmap];0.96[AMR][1000 genomes]
rs11556475	0.92[AMR][1000 genomes]
rs13376594	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17090802	0.80[CEU][hapmap];0.96[AMR][1000 genomes]
rs17090808	1.00[CEU][hapmap];0.96[AMR][1000 genomes]
rs17090925	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17090932	1.00[CEU][hapmap];0.89[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17091001	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17091015	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17091024	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17091028	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17485917	0.97[EUR][1000 genomes]
rs41287936	0.81[AMR][1000 genomes]
rs5671	1.00[CEU][hapmap];1.00[CHD][hapmap];0.86[TSI][hapmap];0.82[AMR][1000 genomes]
rs56752457	0.90[AMR][1000 genomes]
rs58163483	0.96[AMR][1000 genomes]
rs58281678	0.92[AMR][1000 genomes]
rs58293304	0.92[AMR][1000 genomes]
rs59834169	0.89[AMR][1000 genomes]
rs60078028	0.92[AMR][1000 genomes]
rs726352	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74087222	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs74090259	0.89[AMR][1000 genomes]
rs7519263	1.00[EUR][1000 genomes]
rs7552415	1.00[CEU][hapmap];0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949599	chr1:71655652-72327802	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:71694000-71697000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr1:71695000-71697800	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr1:71695000-71697800	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr1:71695000-71698400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr1:71695200-71697600	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr1:71695200-71700800	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr1:71695400-71697400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr1:71695400-71697400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr1:71695400-71697800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr1:71695400-71698400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr1:71696800-71698800	Enhancers	Breast Myoepithelial Primary Cells	Breast

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