Variant report

Variant	rs10493584
Chromosome Location	chr1:76608949-76608950
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11162087	0.92[CEU][hapmap];0.90[CHB][hapmap];0.87[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.93[TSI][hapmap];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1335737	0.91[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs167049	0.90[CHB][hapmap];0.92[JPT][hapmap];0.90[ASN][1000 genomes]
rs392809	0.92[CEU][hapmap];0.90[CHB][hapmap];0.87[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.90[TSI][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4245647	0.92[CEU][hapmap];0.90[CHB][hapmap];0.87[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.93[TSI][hapmap];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7550790	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1488	chr1:76587622-76632635	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:76576600-76620000	Weak transcription	Primary B cells from cord blood	blood
2	chr1:76588200-76615600	Weak transcription	Left Ventricle	heart
3	chr1:76592600-76610800	Weak transcription	Fetal Kidney	kidney
4	chr1:76594600-76615400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr1:76598600-76609800	Weak transcription	Fetal Stomach	stomach
6	chr1:76599800-76620200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr1:76604800-76609200	Enhancers	Brain Hippocampus Middle	brain
8	chr1:76606200-76613400	Weak transcription	Brain Anterior Caudate	brain
9	chr1:76606200-76614800	Weak transcription	Brain Angular Gyrus	brain
10	chr1:76606200-76620000	Weak transcription	Spleen	Spleen
11	chr1:76607200-76609600	Weak transcription	Stomach Mucosa	stomach
12	chr1:76607600-76616000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr1:76607800-76609000	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr1:76608000-76609200	Enhancers	Sigmoid Colon	Sigmoid Colon
15	chr1:76608000-76610000	Enhancers	Right Atrium	heart
16	chr1:76608000-76620200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr1:76608200-76609000	Weak transcription	Aorta	Aorta
18	chr1:76608200-76609000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
19	chr1:76608200-76609600	Enhancers	Fetal Heart	heart
20	chr1:76608200-76620200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr1:76608200-76620200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr1:76608400-76609000	Weak transcription	Fetal Lung	lung
23	chr1:76608400-76609400	Weak transcription	Lung	lung
24	chr1:76608400-76613200	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr1:76608600-76609000	Enhancers	Fetal Intestine Large	intestine
26	chr1:76608600-76610000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr1:76608600-76612200	Enhancers	Ovary	ovary
28	chr1:76608600-76613000	Weak transcription	Brain Cingulate Gyrus	brain
29	chr1:76608600-76616400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr1:76608800-76609200	Enhancers	Duodenum Mucosa	Duodenum
31	chr1:76608800-76609200	Enhancers	Fetal Brain Male	brain
32	chr1:76608800-76609800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr1:76608800-76611200	Enhancers	Adipose Nuclei	Adipose
34	chr1:76608800-76611200	Enhancers	Fetal Intestine Small	intestine
35	chr1:76608800-76611600	Weak transcription	Brain Substantia Nigra	brain
36	chr1:76608800-76615600	Weak transcription	Placenta Amnion	Placenta Amnion

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