Variant report

Variant	rs10494932
Chromosome Location	chr1:211188102-211188103
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10494931	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10863874	0.82[CEU][hapmap]
rs11119658	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11119664	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs11578692	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11579078	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11582440	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11582507	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11583101	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11588573	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12074568	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12121565	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs12722738	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12750194	0.94[AFR][1000 genomes]
rs12750762	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12751504	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12752336	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12756697	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12760791	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1393026	0.81[CEU][hapmap]
rs1393028	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1501558	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1501560	0.82[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs1538287	0.84[JPT][hapmap]
rs1572646	0.84[JPT][hapmap]
rs17017226	0.84[JPT][hapmap]
rs17188741	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17188748	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17188797	1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs1933524	0.84[JPT][hapmap]
rs2134108	0.86[ASN][1000 genomes]
rs2221250	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3111224	0.84[JPT][hapmap]
rs3120778	0.84[JPT][hapmap]
rs3125850	0.84[JPT][hapmap]
rs33985151	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34773128	0.86[ASN][1000 genomes]
rs34827659	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35019263	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35711968	0.98[AFR][1000 genomes]
rs3828021	0.84[JPT][hapmap]
rs4262610	0.94[ASN][1000 genomes]
rs4314946	0.96[AFR][1000 genomes]
rs4638187	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56260926	0.90[ASN][1000 genomes]
rs59374111	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61850226	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6540658	0.84[JPT][hapmap]
rs6669457	0.82[CEU][hapmap]
rs6669706	0.84[JPT][hapmap]
rs6678283	0.81[CEU][hapmap]
rs6683856	0.86[ASN][1000 genomes]
rs6697578	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6702598	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7414286	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7519090	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7536519	0.81[CEU][hapmap]
rs867849	0.84[JPT][hapmap]
rs868963	0.85[CHB][hapmap];0.92[JPT][hapmap]
rs946142	0.84[JPT][hapmap]
rs9662051	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211181800-211193800	Weak transcription	Brain Anterior Caudate	brain
2	chr1:211182800-211228600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr1:211184800-211198600	Weak transcription	Brain Hippocampus Middle	brain
4	chr1:211185200-211194000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr1:211185400-211191800	Weak transcription	HSMMtube	muscle
6	chr1:211186600-211189600	Genic enhancers	HSMM	muscle
7	chr1:211186800-211189200	Enhancers	Muscle Satellite Cultured Cells	--
8	chr1:211187000-211198200	Weak transcription	Brain Angular Gyrus	brain
9	chr1:211187200-211188200	Weak transcription	NHDF-Ad	bronchial
10	chr1:211187200-211191800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr1:211187400-211190600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr1:211187400-211190800	Weak transcription	Osteobl	bone
13	chr1:211187400-211191800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr1:211187600-211198200	Weak transcription	Brain Inferior Temporal Lobe	brain

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