Variant report

Variant	rs10494935
Chromosome Location	chr1:211512775-211512776
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:211499439..211506012-chr1:211509469..211515158,9	K562	blood:
2	chr1:211509710..211514697-chr1:211515653..211521116,6	K562	blood:
3	chr1:211511449..211513491-chr1:211515653..211518862,3	K562	blood:
4	chr1:211511108..211513540-chr1:211519421..211522415,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000082512	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10458470	1.00[CEU][hapmap];0.93[CHB][hapmap];0.89[CHD][hapmap];0.87[JPT][hapmap];0.84[ASN][1000 genomes]
rs10863885	1.00[CEU][hapmap];0.94[JPT][hapmap]
rs11119717	1.00[CEU][hapmap];0.94[JPT][hapmap]
rs11119720	1.00[CEU][hapmap];0.94[JPT][hapmap]
rs11119725	1.00[CEU][hapmap];0.81[JPT][hapmap];0.92[ASN][1000 genomes]
rs11119727	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11119731	0.82[ASN][1000 genomes]
rs11119733	1.00[CEU][hapmap];0.93[CHB][hapmap];0.87[JPT][hapmap];0.82[ASN][1000 genomes]
rs11119734	0.81[ASN][1000 genomes]
rs11119737	0.82[ASN][1000 genomes]
rs11119738	1.00[CEU][hapmap];0.92[CHB][hapmap];0.87[JPT][hapmap]
rs11119740	1.00[CEU][hapmap];0.93[CHB][hapmap];0.87[JPT][hapmap]
rs11577764	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12027277	0.82[ASN][1000 genomes]
rs12030854	0.82[ASN][1000 genomes]
rs12033418	0.93[ASN][1000 genomes]
rs12035966	1.00[CEU][hapmap];0.93[CHB][hapmap];0.87[JPT][hapmap]
rs12039683	1.00[CEU][hapmap];0.80[JPT][hapmap]
rs12039915	1.00[CEU][hapmap];0.93[CHB][hapmap];0.87[JPT][hapmap];0.82[ASN][1000 genomes]
rs12085730	1.00[CEU][hapmap];0.92[CHB][hapmap];0.86[CHD][hapmap];0.87[JPT][hapmap];0.88[ASN][1000 genomes]
rs12097572	0.84[ASN][1000 genomes]
rs17017360	1.00[CEU][hapmap];0.92[CHD][hapmap];0.94[JPT][hapmap]
rs17017401	1.00[CEU][hapmap];0.92[JPT][hapmap];0.92[ASN][1000 genomes]
rs2175633	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2289758	1.00[CEU][hapmap];0.92[CHB][hapmap];0.86[CHD][hapmap];0.87[JPT][hapmap];0.88[ASN][1000 genomes]
rs2920907	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3738201	1.00[CEU][hapmap];0.92[CHB][hapmap];0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs3738202	1.00[CEU][hapmap];0.93[CHB][hapmap];0.81[CHD][hapmap];0.87[JPT][hapmap]
rs4443952	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4951521	1.00[ASW][hapmap];1.00[CEU][hapmap];0.92[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];0.93[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4951743	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57093875	0.88[ASN][1000 genomes]
rs58510761	0.83[ASN][1000 genomes]
rs60169087	0.99[ASN][1000 genomes]
rs61624054	0.82[ASN][1000 genomes]
rs6540679	1.00[ASW][hapmap];0.85[CHD][hapmap]
rs6663729	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6671526	0.92[ASW][hapmap]
rs6681141	0.80[ASN][1000 genomes]
rs6684356	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6698113	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6698191	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7540368	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs784367	0.83[YRI][hapmap]

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211501200-211515200	Enhancers	Sigmoid Colon	Sigmoid Colon
2	chr1:211502400-211519000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr1:211502600-211519000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr1:211504800-211513000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr1:211505000-211518800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr1:211505000-211530200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr1:211505800-211512800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr1:211505800-211513000	Weak transcription	NHEK	skin
9	chr1:211505800-211529800	Weak transcription	Ovary	ovary
10	chr1:211506000-211512800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr1:211506000-211514200	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr1:211506000-211517200	Weak transcription	Fetal Lung	lung
13	chr1:211506000-211518800	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr1:211506200-211514400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr1:211506200-211517400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr1:211506600-211515200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
17	chr1:211506600-211516800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr1:211507200-211514400	Enhancers	Primary hematopoietic stem cells short term culture	blood
19	chr1:211507800-211519000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr1:211508000-211515200	Enhancers	Pancreas	Pancrea
21	chr1:211508400-211519000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr1:211509200-211512800	Weak transcription	Esophagus	oesophagus
23	chr1:211509200-211518800	Weak transcription	HUES64 Cell Line	embryonic stem cell
24	chr1:211509400-211516600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr1:211509400-211519000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr1:211509600-211514200	Weak transcription	K562	blood
27	chr1:211509600-211515400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
28	chr1:211509600-211519000	Weak transcription	H9 Cell Line	embryonic stem cell
29	chr1:211509800-211512800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr1:211509800-211512800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr1:211509800-211512800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr1:211509800-211513000	Weak transcription	Fetal Intestine Large	intestine
33	chr1:211509800-211513000	Weak transcription	A549	lung
34	chr1:211509800-211515200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
35	chr1:211509800-211517200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
36	chr1:211509800-211517800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
37	chr1:211509800-211518800	Weak transcription	H1 Cell Line	embryonic stem cell
38	chr1:211509800-211521600	Enhancers	Primary T helper cells fromperipheralblood	blood
39	chr1:211509800-211529200	Weak transcription	Rectal Smooth Muscle	rectum
40	chr1:211509800-211544200	Weak transcription	HUVEC	blood vessel
41	chr1:211510000-211512800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
42	chr1:211510000-211512800	Weak transcription	Duodenum Smooth Muscle	Duodenum
43	chr1:211510000-211512800	Weak transcription	Fetal Intestine Small	intestine
44	chr1:211510000-211513600	Enhancers	Primary T helper naive cells from peripheral blood	blood
45	chr1:211510000-211514600	Enhancers	Primary B cells from cord blood	blood
46	chr1:211510400-211512800	Weak transcription	Fetal Muscle Trunk	muscle
47	chr1:211510400-211520800	Enhancers	Primary T killer memory cells from peripheral blood	blood
48	chr1:211510600-211555400	Weak transcription	Skeletal Muscle Male	skeletal muscle
49	chr1:211510800-211513600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
50	chr1:211510800-211516600	Enhancers	Primary T helper cells PMA-I stimulated	--

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