Variant report

Variant	rs10494993
Chromosome Location	chr1:215221853-215221854
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10494991	0.91[ASW][hapmap];0.96[CEU][hapmap];0.89[TSI][hapmap];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10494992	0.96[CEU][hapmap];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10864143	0.90[CHB][hapmap];0.92[CHD][hapmap];0.86[JPT][hapmap];0.92[ASN][1000 genomes]
rs10864148	0.84[CHB][hapmap];0.85[TSI][hapmap]
rs11120462	0.90[CHB][hapmap];0.90[CHD][hapmap];0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs1157493	0.85[TSI][hapmap]
rs12026832	0.80[CEU][hapmap]
rs12038094	0.84[CHB][hapmap];0.83[TSI][hapmap]
rs12041425	0.90[CHB][hapmap];0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs12046194	0.91[ASN][1000 genomes]
rs12131054	0.82[CHD][hapmap];0.91[TSI][hapmap];0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12131478	0.90[CHB][hapmap];0.86[JPT][hapmap];0.87[ASN][1000 genomes]
rs1377177	0.96[CEU][hapmap];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1452607	0.90[CHB][hapmap];0.95[CHD][hapmap];0.86[JPT][hapmap];1.00[LWK][hapmap];0.85[YRI][hapmap];0.86[ASN][1000 genomes]
rs1452612	0.90[CHB][hapmap];0.95[CHD][hapmap];0.86[JPT][hapmap];0.88[ASN][1000 genomes]
rs17024148	0.91[ASW][hapmap];1.00[CEU][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17024179	0.84[CHB][hapmap]
rs2123331	1.00[CEU][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34087768	0.86[ASN][1000 genomes]
rs34443503	0.89[ASN][1000 genomes]
rs4655387	0.90[CHB][hapmap];0.86[JPT][hapmap];0.85[YRI][hapmap];0.92[ASN][1000 genomes]
rs4655388	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7514693	0.86[ASN][1000 genomes]
rs7535449	0.86[ASN][1000 genomes]
rs7536850	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv468105	chr1:215167236-215248417	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv549182	chr1:215167236-215248417	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:215216200-215222000	Weak transcription	Osteobl	bone
2	chr1:215220200-215225400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr1:215220600-215225000	Weak transcription	NHDF-Ad	bronchial
4	chr1:215221200-215227600	Weak transcription	HUES48 Cell Line	embryonic stem cell

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