Variant report

Variant	rs10494995
Chromosome Location	chr1:215374312-215374313
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1015244	0.91[EUR][1000 genomes]
rs10157448	0.94[EUR][1000 genomes]
rs10159003	0.94[EUR][1000 genomes]
rs11580781	0.91[EUR][1000 genomes]
rs11582180	0.91[EUR][1000 genomes]
rs1339408	0.88[EUR][1000 genomes]
rs1339409	0.81[EUR][1000 genomes]
rs1538545	0.91[EUR][1000 genomes]
rs1538546	0.91[EUR][1000 genomes]
rs17024410	0.94[EUR][1000 genomes]
rs4284239	0.94[EUR][1000 genomes]
rs61818356	0.85[EUR][1000 genomes]
rs6678565	0.91[EUR][1000 genomes]
rs7526079	0.88[EUR][1000 genomes]
rs7530450	0.82[CEU][hapmap];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873169	chr1:215264486-215453286	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases
2	nsv873170	chr1:215367248-215440975	Weak transcription Genic enhancers Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases
3	esv2760086	chr1:215370570-215381265	Enhancers Strong transcription Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:215367000-215374400	Weak transcription	Osteobl	bone
2	chr1:215372200-215375800	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr1:215372800-215375400	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr1:215373000-215374600	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr1:215373000-215375400	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr1:215373000-215375600	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr1:215373200-215375000	Enhancers	H1 Cell Line	embryonic stem cell
8	chr1:215373200-215375000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr1:215373200-215375200	Enhancers	H9 Cell Line	embryonic stem cell
10	chr1:215373200-215375200	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr1:215373200-215375200	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr1:215373400-215375200	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr1:215373600-215374600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr1:215373800-215375600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr1:215374200-215374600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr1:215374200-215375000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr1:215374200-215375000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr1:215374200-215375000	Enhancers	NHDF-Ad	bronchial

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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