Variant report

Variant	rs10494999
Chromosome Location	chr1:215496139-215496140
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10127809	0.86[ASN][1000 genomes]
rs10494998	0.93[ASN][1000 genomes]
rs11120554	1.00[ASN][1000 genomes]
rs12062740	0.93[ASN][1000 genomes]
rs12064396	0.93[ASN][1000 genomes]
rs12066481	0.93[ASN][1000 genomes]
rs12070874	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs12080428	0.93[ASN][1000 genomes]
rs12084684	0.93[ASN][1000 genomes]
rs12093830	0.93[ASN][1000 genomes]
rs13376274	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs13376355	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1395722	0.93[ASN][1000 genomes]
rs17024732	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs17024744	0.86[ASN][1000 genomes]
rs17024755	0.86[ASN][1000 genomes]
rs17024758	0.86[ASN][1000 genomes]
rs1876407	0.93[ASN][1000 genomes]
rs1876408	1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs28555458	0.92[AFR][1000 genomes]
rs2885989	0.86[ASN][1000 genomes]
rs35134381	0.86[ASN][1000 genomes]
rs3845523	0.93[ASN][1000 genomes]
rs4607849	0.86[ASN][1000 genomes]
rs56802573	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56988669	1.00[EUR][1000 genomes]
rs57110734	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs57309511	0.86[ASN][1000 genomes]
rs57379455	0.86[ASN][1000 genomes]
rs57792259	1.00[EUR][1000 genomes]
rs58163611	0.86[ASN][1000 genomes]
rs58342290	1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs59628625	0.86[ASN][1000 genomes]
rs60026262	0.86[ASN][1000 genomes]
rs60404320	0.82[ASN][1000 genomes]
rs60620576	0.86[ASN][1000 genomes]
rs61057668	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61059263	1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs61167296	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61343540	1.00[EUR][1000 genomes]
rs61362928	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61400453	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61600848	0.86[ASN][1000 genomes]
rs61618553	0.86[ASN][1000 genomes]
rs61652140	0.93[AFR][1000 genomes]
rs6674016	0.93[ASN][1000 genomes]
rs6678049	0.93[ASN][1000 genomes]
rs6679048	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs6686570	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73090129	0.93[AFR][1000 genomes]
rs73090166	0.93[ASN][1000 genomes]
rs73090172	1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs73090177	1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs73090179	1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs73091959	1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs73091984	0.86[ASN][1000 genomes]
rs73091986	0.86[ASN][1000 genomes]
rs73091998	0.86[ASN][1000 genomes]
rs73094106	0.86[ASN][1000 genomes]
rs7546281	0.98[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014878	chr1:215453286-215527616	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1003660	chr1:215453286-215529747	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv4176	chr1:215492233-215501083	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv826620	chr1:215492236-215496397	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
5	esv3321142	chr1:215492265-215501079	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv3321141	chr1:215492277-215501111	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv3321139	chr1:215492331-215501079	Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv3321143	chr1:215492422-215500995	Weak transcription ZNF genes & repeats Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv2422168	chr1:215493469-215499104	ZNF genes & repeats Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv2762151	chr1:215493469-215499104	Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv442576	chr1:215493469-215499104	ZNF genes & repeats Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv514043	chr1:215493777-215496257	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:215494800-215496600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr1:215495400-215496200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links