Variant report

Variant	rs10495149
Chromosome Location	chr1:220793703-220793704
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:220789003..220791666-chr1:220792355..220794125,2	MCF-7	breast:

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10746403	0.95[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10779412	1.00[CEU][hapmap];0.96[CHB][hapmap];0.83[JPT][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10779413	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10779414	0.95[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10863561	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11118567	0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs11118570	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap]
rs11118573	0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes]
rs11118576	0.95[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11118579	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11118584	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11118588	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11588721	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.80[AMR][1000 genomes]
rs1193032	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12044432	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12126252	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12408540	0.91[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap]
rs12735691	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1933001	0.81[AMR][1000 genomes]
rs2152836	0.85[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2244448	0.91[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs2378400	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2589581	0.85[ASN][1000 genomes]
rs2589586	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2589589	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2786606	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2786610	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2786617	0.90[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs2889895	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs3753873	0.92[CHB][hapmap];0.91[JPT][hapmap]
rs3753874	0.91[CHB][hapmap];0.91[JPT][hapmap]
rs3767319	0.85[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs3767320	0.95[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3767321	1.00[CEU][hapmap];0.96[CHB][hapmap];0.83[JPT][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3767323	1.00[CEU][hapmap];0.95[CHB][hapmap];0.83[JPT][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3820347	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3899315	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs3905814	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4120669	0.81[CHB][hapmap]
rs4338357	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4846326	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes]
rs4846327	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4846655	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6541154	0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6675368	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6695583	0.95[CEU][hapmap];0.95[CHB][hapmap];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7514431	0.80[CEU][hapmap]
rs9430949	0.95[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3437691	chr1:220793623-220794039	Weak transcription Strong transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:220749800-220799000	Weak transcription	Aorta	Aorta
2	chr1:220751800-220799000	Weak transcription	Fetal Stomach	stomach
3	chr1:220752600-220808600	Weak transcription	Left Ventricle	heart
4	chr1:220761200-220799200	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr1:220767400-220798600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr1:220767600-220799000	Weak transcription	Fetal Muscle Trunk	muscle
7	chr1:220767800-220826400	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr1:220768000-220804600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr1:220768000-220813800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr1:220768400-220799000	Weak transcription	Adipose Nuclei	Adipose
11	chr1:220774000-220796000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr1:220776000-220798800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr1:220778800-220837200	Weak transcription	NHEK	skin
14	chr1:220782800-220825800	Weak transcription	Fetal Brain Male	brain
15	chr1:220783200-220815000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr1:220784200-220836600	Weak transcription	Fetal Lung	lung
17	chr1:220784800-220799200	Weak transcription	Fetal Muscle Leg	muscle
18	chr1:220784800-220815000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr1:220785000-220799200	Weak transcription	Fetal Brain Female	brain
20	chr1:220785000-220815400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr1:220785800-220808600	Weak transcription	Brain Anterior Caudate	brain
22	chr1:220786800-220799800	Weak transcription	Fetal Heart	heart
23	chr1:220788800-220799000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr1:220790800-220795600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr1:220791000-220794000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr1:220791000-220804200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr1:220791200-220828600	Weak transcription	Right Ventricle	heart
28	chr1:220791200-220841200	Weak transcription	HMEC	breast
29	chr1:220791400-220801600	Weak transcription	H9 Cell Line	embryonic stem cell
30	chr1:220791600-220794000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr1:220791600-220794600	Strong transcription	HUES64 Cell Line	embryonic stem cell
32	chr1:220792000-220795200	Strong transcription	HUES48 Cell Line	embryonic stem cell
33	chr1:220792000-220834200	Weak transcription	Pancreatic Islets	Pancreatic Islet
34	chr1:220792200-220796000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr1:220792200-220798200	Weak transcription	Brain Germinal Matrix	brain
36	chr1:220792400-220799000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
37	chr1:220792600-220795800	Weak transcription	Cortex derived primary cultured neurospheres	brain
38	chr1:220792600-220798600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr1:220792600-220798800	Weak transcription	Stomach Smooth Muscle	stomach
40	chr1:220792800-220803600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
41	chr1:220793200-220795000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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