Variant report

Variant	rs10495150
Chromosome Location	chr1:220801974-220801975
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1073461	0.83[ASW][hapmap];1.00[CEU][hapmap];0.91[LWK][hapmap];0.82[MEX][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap]
rs1193031	1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12070516	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.87[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13375845	0.87[AFR][1000 genomes]
rs2786612	1.00[CEU][hapmap];0.86[YRI][hapmap]
rs35322308	1.00[EUR][1000 genomes]
rs36024488	1.00[EUR][1000 genomes]
rs57744862	0.83[AFR][1000 genomes]
rs6541152	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];0.83[TSI][hapmap];0.92[YRI][hapmap]
rs6541153	1.00[CEU][hapmap];0.92[YRI][hapmap]
rs6660022	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs6672055	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs6676051	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs6676985	1.00[EUR][1000 genomes]
rs6690794	0.87[AFR][1000 genomes]
rs73105459	1.00[EUR][1000 genomes]
rs7512507	1.00[CEU][hapmap]
rs7518985	1.00[CEU][hapmap]
rs7547630	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7547728	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7556342	1.00[CEU][hapmap]

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:220752600-220808600	Weak transcription	Left Ventricle	heart
2	chr1:220767800-220826400	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr1:220768000-220804600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr1:220768000-220813800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr1:220778800-220837200	Weak transcription	NHEK	skin
6	chr1:220782800-220825800	Weak transcription	Fetal Brain Male	brain
7	chr1:220783200-220815000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr1:220784200-220836600	Weak transcription	Fetal Lung	lung
9	chr1:220784800-220815000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr1:220785000-220815400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr1:220785800-220808600	Weak transcription	Brain Anterior Caudate	brain
12	chr1:220791000-220804200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr1:220791200-220828600	Weak transcription	Right Ventricle	heart
14	chr1:220791200-220841200	Weak transcription	HMEC	breast
15	chr1:220792000-220834200	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr1:220792800-220803600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr1:220795800-220802000	Strong transcription	Cortex derived primary cultured neurospheres	brain
18	chr1:220796200-220827800	Weak transcription	Gastric	stomach
19	chr1:220798000-220836400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr1:220798800-220826200	Weak transcription	Brain Angular Gyrus	brain
21	chr1:220799600-220827000	Weak transcription	Stomach Smooth Muscle	stomach
22	chr1:220799800-220803400	Weak transcription	HUES48 Cell Line	embryonic stem cell
23	chr1:220799800-220814600	Weak transcription	Aorta	Aorta
24	chr1:220800000-220802400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr1:220800000-220804400	Weak transcription	H1 Cell Line	embryonic stem cell
26	chr1:220800000-220804400	Weak transcription	HUES6 Cell Line	embryonic stem cell
27	chr1:220800000-220806200	Weak transcription	Adipose Nuclei	Adipose
28	chr1:220800000-220808800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr1:220800000-220814800	Weak transcription	Fetal Muscle Leg	muscle
30	chr1:220800000-220837800	Weak transcription	Esophagus	oesophagus
31	chr1:220800200-220808600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
32	chr1:220800200-220814600	Weak transcription	Fetal Stomach	stomach
33	chr1:220800400-220804800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr1:220800400-220806000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr1:220800400-220811800	Weak transcription	Fetal Muscle Trunk	muscle
36	chr1:220800600-220805800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr1:220800600-220808800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr1:220800800-220826400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr1:220801000-220808600	Weak transcription	Brain Germinal Matrix	brain
40	chr1:220801400-220802200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr1:220801400-220802200	Enhancers	HUES64 Cell Line	embryonic stem cell
42	chr1:220801400-220809800	Weak transcription	Fetal Brain Female	brain
43	chr1:220801600-220802000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr1:220801800-220802200	Weak transcription	H9 Cell Line	embryonic stem cell
45	chr1:220801800-220807000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr1:220801800-220808400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr1:220801800-220815200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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