Variant report

Variant	rs10496053
Chromosome Location	chr2:56010255-56010256
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10187329	1.00[ASN][1000 genomes]
rs10199082	1.00[ASN][1000 genomes]
rs10207635	1.00[ASN][1000 genomes]
rs11899380	1.00[ASN][1000 genomes]
rs1430201	0.84[YRI][hapmap]
rs17369379	1.00[ASN][1000 genomes]
rs17369434	1.00[ASN][1000 genomes]
rs1802575	1.00[ASN][1000 genomes]
rs41393947	1.00[ASN][1000 genomes]
rs9309272	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531374	chr2:55653723-56299784	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv999962	chr2:55976574-56011517	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv997683	chr2:55976574-56013875	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv431080	chr2:55988293-56011517	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:55989400-56015000	Weak transcription	Aorta	Aorta
2	chr2:56008200-56010400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr2:56008800-56010400	Weak transcription	HSMM	muscle
4	chr2:56009400-56010600	Enhancers	A549	lung
5	chr2:56009600-56010800	Enhancers	Placenta Amnion	Placenta Amnion
6	chr2:56009800-56011600	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr2:56010000-56010400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr2:56010000-56010400	Enhancers	K562	blood
9	chr2:56010000-56010400	Enhancers	NHEK	skin
10	chr2:56010000-56010600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr2:56010000-56010600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr2:56010200-56010400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr2:56010200-56012800	Weak transcription	Brain Anterior Caudate	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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